View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8443_high_15 (Length: 243)
Name: NF8443_high_15
Description: NF8443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8443_high_15 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 239
Target Start/End: Original strand, 32869225 - 32869459
Alignment:
| Q |
6 |
aatacttcacatgatataattcagtttaaaactgagtagcaatacaatgaattacttttcactagatatcaacactcaaagcac-atatgcctaagtaat |
104 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
32869225 |
aatacttcacatgatataattcagtttaaaactgagtagcaatacaatgaattacttttcactagatatcaacactcaaagcaccatatgcctaagtaat |
32869324 |
T |
|
| Q |
105 |
aatctctataagagattaagagtcactactatactatagtatatatgcaggatttcactaatgcaaaatattttcactgatgacattttacttcattgtt |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
32869325 |
aatctctataagagattaagagtcactactatactatagtatatatgcaggatttcactaatgcaaaatattttcactaatgacattttacttcattgtt |
32869424 |
T |
|
| Q |
205 |
tcatcttcaatccatcatccatcatcttttccaat |
239 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
32869425 |
tcatcttcaatccatcatccatcatcttttccaat |
32869459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 19 - 146
Target Start/End: Original strand, 26650305 - 26650422
Alignment:
| Q |
19 |
atataattcagtttaaaactgagtagcaatacaatgaattacttttcactagatatcaacactcaaagcacatatgcctaagtaataatctctataagag |
118 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| || | |
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| T |
26650305 |
atataattcagtttaaaactcagtagcaatacaatgaattacctttcactagatatcaacactcaaagcacatatacctaagtaatgat----------g |
26650394 |
T |
|
| Q |
119 |
attaagagtcactactatactatagtat |
146 |
Q |
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|||||||||||||||||||||||||||| |
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|
| T |
26650395 |
attaagagtcactactatactatagtat |
26650422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 19257343 - 19257303
Alignment:
| Q |
197 |
tcattgtttcatcttcaatccatcatccatcatcttttcca |
237 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
19257343 |
tcattgtttcctcttcaatccatcatccatcatcttttcca |
19257303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 21869643 - 21869603
Alignment:
| Q |
197 |
tcattgtttcatcttcaatccatcatccatcatcttttcca |
237 |
Q |
| |
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||||||||| ||||||||| |||||| |||||||||||||| |
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|
| T |
21869643 |
tcattgtttgatcttcaattcatcatacatcatcttttcca |
21869603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 197 - 236
Target Start/End: Original strand, 8303800 - 8303839
Alignment:
| Q |
197 |
tcattgtttcatcttcaatccatcatccatcatcttttcc |
236 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |
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|
| T |
8303800 |
tcattgtttcatcttcaatccattatccatcatcttttcc |
8303839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 197 - 234
Target Start/End: Complemental strand, 21554015 - 21553978
Alignment:
| Q |
197 |
tcattgtttcatcttcaatccatcatccatcatctttt |
234 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| |
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|
| T |
21554015 |
tcattgtttcatcttcaatcaatcatccatcatctttt |
21553978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 197 - 237
Target Start/End: Complemental strand, 20767225 - 20767185
Alignment:
| Q |
197 |
tcattgtttcatcttcaatccatcatccatcatcttttcca |
237 |
Q |
| |
|
|||||||||||||||||||||||| || ||||| ||||||| |
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|
| T |
20767225 |
tcattgtttcatcttcaatccatcttcaatcatattttcca |
20767185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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