View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8443_high_5 (Length: 324)
Name: NF8443_high_5
Description: NF8443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8443_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 12 - 310
Target Start/End: Complemental strand, 12908179 - 12907881
Alignment:
| Q |
12 |
atggacatcattggccctgttagacaatctcaatctgtgtcacttaaccaccctaattgcatcgttaagtctacagacaagcaggtactgtggtcaaagt |
111 |
Q |
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| T |
12908179 |
atggacatcattggccctgttagacaatctcaatctgtgtcacataaccaccctaattgcatcgttaagtctacagacaagcaggtactgtggtcaaagt |
12908080 |
T |
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| Q |
112 |
ttctacctctcatcctattatgaatatcccttcgagtatcttaataaattgctgtctctcttatgatccttaaaattacagggcaagaaggttaatttat |
211 |
Q |
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| T |
12908079 |
ttctacctctcatcctattatgaatatcccttcgagtatcttaataaattgctgtctctcttatgatccttaaaattacagggcaagaaggttaatttat |
12907980 |
T |
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| Q |
212 |
tccaacctgctgctgaattcctgccaatgattaatgaggtggatatttgagaaatactaccatgaatcattgttcagttttctttctttattgtgatgt |
310 |
Q |
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| T |
12907979 |
tccaacctgctgctgaattcctgccaatgattaatgaggtggatatttgagaaatactaccatgaatcattgttcagttttctttctttattgtgatgt |
12907881 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 12 - 310
Target Start/End: Original strand, 13311964 - 13312246
Alignment:
| Q |
12 |
atggacatcattggccctgttagacaatctcaatctgtgtcacttaaccaccctaattgcatcgttaagtctacagacaagcaggtactgtggtcaaagt |
111 |
Q |
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| T |
13311964 |
atggacatcattggccctgttagacaatctttatctatatcacataaccaccctaattgcatcattaagtccgcagacaagcaggtactgtggtcaatgt |
13312063 |
T |
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| Q |
112 |
ttctacctctcatcctattatgaatatcccttcgagtatcttaataaattgctgtctctcttatgatccttaaaattacagggcaagaaggttaatttat |
211 |
Q |
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| T |
13312064 |
gtctacat-tcttccaattatgaatatctcttcgagaatcttaataaattgatatctctcttatgatcc----aattacaagg---gaaggttaatttat |
13312155 |
T |
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| Q |
212 |
tccaacctgctgctgaattcctgccaatgattaatgaggtggatatttgagaaatactaccatgaatcattgttcagttttctttctttattgtgatgt |
310 |
Q |
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| T |
13312156 |
tccaacctgctgctgaattcctgccaatgattaatgaggtggat--------actactattattaatcatttttcaattttctttctttattgtgatgt |
13312246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 1566209 - 1566278
Alignment:
| Q |
182 |
taaaattacagggcaagaaggttaatttattccaacctgctgctgaattcctgccaatgattaatgaggt |
251 |
Q |
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| T |
1566209 |
taaaattacagggtaaggaagttaatttattccaacctgctgctgaattcctgcctatgatcgatgaggt |
1566278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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