View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8443_high_7 (Length: 312)
Name: NF8443_high_7
Description: NF8443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8443_high_7 |
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| [»] scaffold0125 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 27 - 301
Target Start/End: Original strand, 21843617 - 21843890
Alignment:
| Q |
27 |
agaaattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtcttcattga |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21843617 |
agaaattcccttttgattcttgtttttgggtattctttgaagatatctatttagatctagattatgtttttgttgttttgattatttgggtcttcattga |
21843716 |
T |
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| Q |
127 |
gtttatgtagtgacnnnnnnnngttgatttctgata-ggnnnnnnngtttccaataatgggtatttgnnnnnnnnnttaacctttttatgttgctaaatc |
225 |
Q |
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|||||||||||||| |||||||||||||| || ||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
21843717 |
gtttatgtagtgac-tttttttgttgatttctgatagggtttttttgtttctaataatgggtatttg-aaaaaaaattaacctttttatgttgctaaatc |
21843814 |
T |
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| Q |
226 |
cttggttgatttttattgttgtgctgttctgctatctgcatttagccggttctttttgtctggctctatgatgtcc |
301 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21843815 |
cttggttgatttttattgttatgctgttctgctatctgcatttagccggttctttttgtctggctctatgatgtcc |
21843890 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0125 (Bit Score: 171; Significance: 8e-92; HSPs: 1)
Name: scaffold0125
Description:
Target: scaffold0125; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 27 - 302
Target Start/End: Complemental strand, 20235 - 19961
Alignment:
| Q |
27 |
agaaattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtcttcattga |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20235 |
agaaattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtcttcattga |
20136 |
T |
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| Q |
127 |
gtttatgtagtgacnnnnnnnngttgatttctgata-ggnnnnnnngtttccaataatgggtatttgnnnnnnnnnttaacctttttatgttgctaaatc |
225 |
Q |
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|||||||||||||| |||||||| ||||| || ||||| ||||||||||||||| |||||||| ||||||||||||||| |
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| T |
20135 |
gtttatgtagtgac-tttttttgttgatttttgatagggtttttttgtttctaataatgggtatttg-aaaaaaaattaaccttgttatgttgctaaatc |
20038 |
T |
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| Q |
226 |
cttggttgatttttattgttgtgctgttctgctatctgcatttagccggttctttttgtctggctctatgatgtcca |
302 |
Q |
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| T |
20037 |
cttggttgatttttattgttgtgctgttctgctatctgcatttagctggttctttttgtctggctctatgatgtcca |
19961 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 7e-49; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 10660080 - 10660190
Alignment:
| Q |
30 |
aattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtcttcattgagtt |
129 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10660080 |
aattcccttttgatttttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtctacattgagtt |
10660179 |
T |
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| Q |
130 |
tatgtagtgac |
140 |
Q |
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|||||| |||| |
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| T |
10660180 |
tatgtactgac |
10660190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 30 - 140
Target Start/End: Original strand, 10874225 - 10874335
Alignment:
| Q |
30 |
aattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtcttcattgagtt |
129 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10874225 |
aattcccttttgatttttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgttgttttgattatttgggtctacattgagtt |
10874324 |
T |
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| Q |
130 |
tatgtagtgac |
140 |
Q |
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|||||| |||| |
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| T |
10874325 |
tatgtactgac |
10874335 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 10660573 - 10660660
Alignment:
| Q |
202 |
ttaacctttttatgttgctaaatccttggttgatttttattgttgtgctgttctgctatctgcatttagccggttctttttgtctggc |
289 |
Q |
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||||||||||||||||| |||||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
10660573 |
ttaacctttttatgttgttaaatccttggttggtttttattgttgtgctattatgctatctgcatttagccggttctttttgtctggc |
10660660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 202 - 289
Target Start/End: Original strand, 10874718 - 10874805
Alignment:
| Q |
202 |
ttaacctttttatgttgctaaatccttggttgatttttattgttgtgctgttctgctatctgcatttagccggttctttttgtctggc |
289 |
Q |
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| T |
10874718 |
ttaacctttttatgttgttaaatccttggttggtttttattgttgtgctattatgctatctgcatttagccggttctttttgtctggc |
10874805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 30 - 140
Target Start/End: Complemental strand, 12818615 - 12818505
Alignment:
| Q |
30 |
aattcccttttgattcttgtttttgggtattctttgaagatatctatttaggtctagattatgtttttgtt--gttttgattatttgggtcttcattgag |
127 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||| || ||| ||||||| |||||| || ||||||||| ||||||||||||||||| |
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| T |
12818615 |
aattcccttttgattcttttttttgggtattctttgaagataact--ttaaacatagattacgttttttttttgttttgattgtttgggtcttcattgag |
12818518 |
T |
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| Q |
128 |
tttatgtagtgac |
140 |
Q |
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||||||||||||| |
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| T |
12818517 |
tttatgtagtgac |
12818505 |
T |
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