View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8443_high_9 (Length: 301)
Name: NF8443_high_9
Description: NF8443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8443_high_9 |
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Alignment Details
Target: chr6 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 14 - 279
Target Start/End: Complemental strand, 6686496 - 6686231
Alignment:
| Q |
14 |
tttcgtgttatcatggaaaatttgttcaatttaagccaaggaggaggaccaaagatctgtgtacgtccgataacaaccagttctaattgcttagaatctg |
113 |
Q |
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| T |
6686496 |
tttcgtgttatcatggaaaatttgttcaatttaagccaaggaggaggaccaaagatctgtgtacgtctgataacaaccagttctaattgcttagaatctg |
6686397 |
T |
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| Q |
114 |
atcatattattattggtagaactgatgagaaaatgaagatggtaagcatgctgcttgaacaagactccaatgttaatgttatttcctctgttgctattgt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6686396 |
atcatattattattggtagaactgatgagaaaatgaagatggtaagcatgttgcttgaacaagactccaatgttaatgttatttcctctgttgctattgt |
6686297 |
T |
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| Q |
214 |
tggtctttgtggtatatataggcaagaccactcttgctcaaatggtgtacaatgatgctaaggtca |
279 |
Q |
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||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
6686296 |
tggtcttggtggtatatataggcaagactactcttgctcaaatggtgtacaatgatgctaaggtca |
6686231 |
T |
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