View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8443_low_1 (Length: 705)

Name: NF8443_low_1
Description: NF8443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8443_low_1
NF8443_low_1
[»] chr8 (2 HSPs)
chr8 (366-694)||(12171101-12171428)
chr8 (366-694)||(12415529-12415856)
[»] chr2 (4 HSPs)
chr2 (1-94)||(29732789-29732882)
chr2 (9-94)||(45155721-45155806)
chr2 (9-49)||(3399993-3400033)
chr2 (9-49)||(41213450-41213490)
[»] chr6 (4 HSPs)
chr6 (1-65)||(24607794-24607858)
chr6 (1-65)||(27576317-27576381)
chr6 (9-49)||(23070501-23070541)
chr6 (9-49)||(30123656-30123696)
[»] chr5 (2 HSPs)
chr5 (1-65)||(31067484-31067548)
chr5 (9-49)||(35192786-35192826)
[»] chr7 (2 HSPs)
chr7 (1-65)||(224199-224262)
chr7 (31-85)||(5955458-5955512)
[»] chr3 (3 HSPs)
chr3 (9-94)||(54575115-54575200)
chr3 (31-85)||(53489168-53489222)
chr3 (9-49)||(6935608-6935648)
[»] chr1 (1 HSPs)
chr1 (9-102)||(24988287-24988380)
[»] chr4 (1 HSPs)
chr4 (9-49)||(45560216-45560256)


Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 366 - 694
Target Start/End: Original strand, 12171101 - 12171428
Alignment:
Q  366 tccagctcagtctaagtgaatcttgttacttttcttagttcaaagttaaaaatttctctgaaaa--gagtgtata-taaattaatattgtcatgtgattg 462  Q
    |||||||||| |||||||||||| | |||||||||| |||||||||||||||||| ||||||||  ||||||||| ||| |||| || || |||| |||     
T  12171101 tccagctcaggctaagtgaatct-gctacttttcttggttcaaagttaaaaatttgtctgaaaattgagtgtataataacttaaaat-gtaatgt-att- 12171196  T
Q  463 tgtggagactgtattcttctcattttctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtca 562  Q
      ||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  12171197 --tggagactggaattttctcattttctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtca 12171294  T
Q  563 actgcttgtgctggaactgtagttaccgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttctt 660  Q
    |||||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  12171295 actgcttgtgctagaactgtagttgctgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttctt 12171394  T
Q  661 gttttcactggtgattctttcctatgatgtccat 694  Q
     ||||||||||||||| |||||||||||||||||    
T  12171395 attttcactggtgattatttcctatgatgtccat 12171428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 366 - 694
Target Start/End: Original strand, 12415529 - 12415856
Alignment:
Q  366 tccagctcagtctaagtgaatcttgttacttttcttagttcaaagttaaaaatttctctgaaaa--gagtgtata-taaattaatattgtcatgtgattg 462  Q
    |||||||||| |||||||||||| | |||||||||| |||||||||||||||||| ||||||||  ||||||||| ||| |||| || || |||| |||     
T  12415529 tccagctcaggctaagtgaatct-gctacttttcttggttcaaagttaaaaatttgtctgaaaattgagtgtataataacttaaaat-gtaatgt-att- 12415624  T
Q  463 tgtggagactgtattcttctcattttctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtca 562  Q
      ||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||||||    
T  12415625 --tggagactggaattttctcattttctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtca 12415722  T
Q  563 actgcttgtgctggaactgtagttaccgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttctt 660  Q
    |||||||||||| ||||||||||| | ||||||||||||| ||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||    
T  12415723 actgcttgtgctagaactgtagttgctgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttctt 12415822  T
Q  661 gttttcactggtgattctttcctatgatgtccat 694  Q
     ||||||||||||||| |||||||||||||||||    
T  12415823 attttcactggtgattatttcctatgatgtccat 12415856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 29732882 - 29732789
Alignment:
Q  1 tgttaattttattgattacaatattgatcatttttgtgttagttacaatgatgacaatttcttatatttgcggatcttattttcagtttgaata 94  Q
    ||||||||||||||||||||||||||||| | |  |||||||||||||||||||  ||||| ||| ||| ||||||||||||| ||||||||||    
T  29732882 tgttaattttattgattacaatattgatcctctccgtgttagttacaatgatgatcatttcctatttttacggatcttatttttagtttgaata 29732789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 45155806 - 45155721
Alignment:
Q  9 ttattgattacaatattgatcatttttgtgttagttacaatgatgacaatttcttatatttgcggatcttattttcagtttgaata 94  Q
    |||||||||| |||||||||| ||| ||||||||||||||| |  ||  ||| | || ||| ||||||||||||||| ||| ||||    
T  45155806 ttattgattagaatattgatcttttatgtgttagttacaataaacactttttttaatctttacggatcttattttcaatttcaata 45155721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 3399993 - 3400033
Alignment:
Q  9 ttattgattacaatattgatcatttttgtgttagttacaat 49  Q
    |||||||||| |||||||||| ||| |||||||||||||||    
T  3399993 ttattgattagaatattgatcttttatgtgttagttacaat 3400033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 41213490 - 41213450
Alignment:
Q  9 ttattgattacaatattgatcatttttgtgttagttacaat 49  Q
    |||||||||| |||||||||| ||| |||||||||||||||    
T  41213490 ttattgattagaatattgatcttttatgtgttagttacaat 41213450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 24607858 - 24607794
Alignment:
Q  1 tgttaattttattgattacaatattgatcatttttgtgttagttacaatgatgacaatttcttat 65  Q
    |||||||||||||||||||||||||||||||||  || ||||||||||||||||| |||||||||    
T  24607858 tgttaattttattgattacaatattgatcatttccgtattagttacaatgatgaccatttcttat 24607794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 27576381 - 27576317
Alignment:
Q  1 tgttaattttattgattacaatattgatcatttttgtgttagttacaatgatgacaatttcttat 65  Q
    ||||||||||||||||||| ||||||||| |   ||| |||||||||||||||||||||||||||    
T  27576381 tgttaattttattgattactatattgatcctccatgtattagttacaatgatgacaatttcttat 27576317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 23070541 - 23070501
Alignment:
Q  9 ttattgattacaatattgatcatttttgtgttagttacaat 49  Q
    |||||||||| |||||||||| ||| |||||||||||||||    
T  23070541 ttattgattagaatattgatcttttatgtgttagttacaat 23070501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 30123696 - 30123656
Alignment:
Q  9 ttattgattacaatattgatcatttttgtgttagttacaat 49  Q
    |||||||||| |||||||||| ||| |||||||||||||||    
T  30123696 ttattgattagaatattgatcttttctgtgttagttacaat 30123656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 3e-16; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 31067548 - 31067484
Alignment:
Q  1 tgttaattttattgattacaatattgatcatttttgtgttagttacaatgatgacaatttcttat 65  Q
    |||||||| |||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||||    
T  31067548 tgttaattgtattgattacaatattgatcatttctgtgttagttataatgatgaccattttttat 31067484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Original strand, 35192786 - 35192826
Alignment:
Q  9 ttattgattacaatattgatcatttttgtgttagttacaat 49  Q
    |||||||||| |||||||||  |||||||||||||||||||    
T  35192786 ttattgattagaatattgatattttttgtgttagttacaat 35192826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 224199 - 224262
Alignment:
Q  1 tgttaattttattgattacaatattgatcatttttgtgttagttacaatgatgacaatttcttat 65  Q
    |||||||||||||||||||||||||||| | |||| ||||||||||||||||||  |||||||||    
T  224199 tgttaattttattgattacaatattgatta-ttttatgttagttacaatgatgatcatttcttat 224262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 31 - 85
Target Start/End: Original strand, 5955458 - 5955512
Alignment:
Q  31 tttttgtgttagttacaatgatgacaatttcttatatttgcggatcttattttca 85  Q
    ||||||||||||||||||||||||  ||||||||| ||| ||||| | |||||||    
T  5955458 tttttgtgttagttacaatgatgagtatttcttatgtttacggatttcattttca 5955512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 9 - 94
Target Start/End: Complemental strand, 54575200 - 54575115
Alignment:
Q  9 ttattgattacaatattgatcatttttgtgttagttacaatgatgacaatttcttatatttgcggatcttattttcagtttgaata 94  Q
    ||||| |||| ||||| |||  |||||||||||||||||||||||| |||||||||| ||| ||||| | ||||||| ||| ||||    
T  54575200 ttatttattagaatatggatattttttgtgttagttacaatgatgataatttcttatgtttacggatttcattttcaatttaaata 54575115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 31 - 85
Target Start/End: Complemental strand, 53489222 - 53489168
Alignment:
Q  31 tttttgtgttagttacaatgatgacaatttcttatatttgcggatcttattttca 85  Q
    ||||||||||||||||||| |||||  ||| |||| ||| |||||||||||||||    
T  53489222 tttttgtgttagttacaataatgacttttttttatctttacggatcttattttca 53489168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 6935648 - 6935608
Alignment:
Q  9 ttattgattacaatattgatcatttttgtgttagttacaat 49  Q
    |||||||||| |||||||||| ||| |||||||||||||||    
T  6935648 ttattgattagaatattgatcttttatgtgttagttacaat 6935608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 9 - 102
Target Start/End: Original strand, 24988287 - 24988380
Alignment:
Q  9 ttattgattacaatattgatcatttttgtgttagttacaatgatgacaatttcttatatttgcggatcttattttcagtttgaataaaagattg 102  Q
    ||||| |||| ||||| |||| |||||||||||||||| |||||||  |||| |||| ||| || || | ||||||| ||| |||| |||||||    
T  24988287 ttatttattagaatatagatcttttttgtgttagttaccatgatgattattttttatgtttacgaatttcattttcaatttaaatagaagattg 24988380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 9 - 49
Target Start/End: Complemental strand, 45560256 - 45560216
Alignment:
Q  9 ttattgattacaatattgatcatttttgtgttagttacaat 49  Q
    |||||||||| |||||||||| ||| |||||||||||||||    
T  45560256 ttattgattagaatattgatcttttatgtgttagttacaat 45560216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University