View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8443_low_13 (Length: 370)
Name: NF8443_low_13
Description: NF8443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8443_low_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 2 - 370
Target Start/End: Original strand, 34092701 - 34093069
Alignment:
| Q |
2 |
ggttcgaacatgaaacttcaacgtttcgtattatttggatcaccattatcattttgtctgcaaacaaaaataaaaagaaagagatataactcttcataaa |
101 |
Q |
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| T |
34092701 |
ggttcgaacatgaaacttcaacgtttcgtattatttggatcaccataatcatttcgtctgcaaacaaaaataaaaagaaagagatataactcttcataaa |
34092800 |
T |
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| Q |
102 |
cnnnnnnnnnnnnnnnnnnnaaatacatgattaggacttttctcaatgagaaactttgccaaagtcagattgatattgaataattggctaaacaaatctc |
201 |
Q |
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| T |
34092801 |
cttttttatttttagtttttaaatacatgattaggacttttctcaataagaaactttgccaaagtcagattgatattgaataattggcaaaacaaatctc |
34092900 |
T |
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| Q |
202 |
acattatatatacacaaccacttgaaataaaagaaacaattacattgtatgcaaatcattatcgttggctattagagcatatattaattcaaagatgaaa |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34092901 |
acattatatatacacaaccacttgaaataaaagaaacaattacattgtatgcaaatcattatcgttggctattagagcatatattaattcaaagatgaaa |
34093000 |
T |
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| Q |
302 |
aagacattggtagctagaaaaatgaagaagaggcattaggttaggtatatgtgatgatgtccatctcat |
370 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| |
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| T |
34093001 |
aagacattggtagctagaaaaatgaagaagaggcattaggttaggtaaatgtgatgatgtccacctcat |
34093069 |
T |
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