View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8443_low_15 (Length: 318)
Name: NF8443_low_15
Description: NF8443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8443_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 58 - 309
Target Start/End: Original strand, 9436331 - 9436584
Alignment:
| Q |
58 |
aaaaaaggaagagaaggacacatctatctagtaaagcaaggtgaaacactcttttcatctgacgaagaaaatgctagcttgcctcttgtaaaaggaagca |
157 |
Q |
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| T |
9436331 |
aaaaaaggaagagaaggacacatctatctagtaaagcaaggtgaaacacgcttttcatctgacgaagaaaatgctagcttgcctcttgtaaaaggaagca |
9436430 |
T |
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| Q |
158 |
ttcctctggtggaaaacnnnnnnnnctc--agacctttcaaagaacccataatttggtcttaaataagtgaacacgcaaagatttgtgaagtttcaaaga |
255 |
Q |
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| T |
9436431 |
ttcctctggtggaaaacaaaaaaaactcatagacctttcaaagaacccataatttggtcttaaataagtgaacacgaaaagatttgtgaagtttcaaaga |
9436530 |
T |
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| Q |
256 |
tgcatcttcgtctgttatttaaacatctttacctaaattaatacggcttcatct |
309 |
Q |
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| T |
9436531 |
tgcatcttcttctgttatttaaacttctttacctaaattaatatggcttcatct |
9436584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 100 - 257
Target Start/End: Original strand, 9389774 - 9389933
Alignment:
| Q |
100 |
gaaacactcttttcatctgacgaagaaaatgctagcttgcctcttgt-aaaaggaagcattcctctggtggaaaacnnnnnnnnctc--agacctttcaa |
196 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||| || ||| |||| |||||| |
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| T |
9389774 |
gaaacactcttttcatccgacgaagaaaatgctagcttgcctctagtaaaaaggaagcattcctctggtggaacac-aaaaaagctcatagacttttcaa |
9389872 |
T |
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| Q |
197 |
agaacccataatttggtcttaaataagtgaacacgcaaagatttgtgaagtttcaaagatg |
257 |
Q |
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| T |
9389873 |
agaacccataatttggtcttaaaaaagtgaacactcgaagatttgtgaagtttcaaagatg |
9389933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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