View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8443_low_21 (Length: 273)
Name: NF8443_low_21
Description: NF8443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8443_low_21 |
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| [»] scaffold0140 (4 HSPs) |
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Alignment Details
Target: scaffold0140 (Bit Score: 107; Significance: 1e-53; HSPs: 4)
Name: scaffold0140
Description:
Target: scaffold0140; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 50 - 211
Target Start/End: Original strand, 36735 - 36900
Alignment:
| Q |
50 |
ggtcattacaaacatcataatgtacaaaaacataacataacaggtccaatagcaccaaaacatccnnnnnnnn--ggt-gctaaccaaa-ttacagtttc |
145 |
Q |
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| T |
36735 |
ggtcattaccaacatcataatgtaccaaaacataacataacaggtccaatagcaccaaaacatccaaaaaaaaaaggtagctaaccaaaattacagtttc |
36834 |
T |
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| Q |
146 |
aacataagcatcatagtgcaactaataggttcatagccaaaaagtaaagtaaaacttaaacattaa |
211 |
Q |
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| T |
36835 |
aacataagcatcatagtgcaactaataggttcatagccaaaaagtaaagtaaaacttaaacattaa |
36900 |
T |
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Target: scaffold0140; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 36631 - 36704
Alignment:
| Q |
1 |
aaaatggtcattactaacaccataatgtaccaagacataacaccaaaatggtcattacaaacatcataatgtac |
74 |
Q |
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| T |
36631 |
aaaatggtcattactaacaccataatgtaccaagacataacaccaaaatggtcattacaaacaccataatgtac |
36704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 41 - 86
Target Start/End: Original strand, 36627 - 36672
Alignment:
| Q |
41 |
caccaaaatggtcattacaaacatcataatgtacaaaaacataaca |
86 |
Q |
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| T |
36627 |
caccaaaatggtcattactaacaccataatgtaccaagacataaca |
36672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0140; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 36675 - 36707
Alignment:
| Q |
1 |
aaaatggtcattactaacaccataatgtaccaa |
33 |
Q |
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| T |
36675 |
aaaatggtcattacaaacaccataatgtaccaa |
36707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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