View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8443_low_22 (Length: 268)

Name: NF8443_low_22
Description: NF8443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8443_low_22
NF8443_low_22
[»] chr8 (2 HSPs)
chr8 (19-143)||(20814764-20814888)
chr8 (207-258)||(20814952-20815003)
[»] scaffold0069 (2 HSPs)
scaffold0069 (19-141)||(26533-26655)
scaffold0069 (213-253)||(26327-26368)
[»] scaffold0406 (1 HSPs)
scaffold0406 (19-143)||(7780-7904)
[»] chr6 (3 HSPs)
chr6 (19-143)||(21814420-21814544)
chr6 (19-143)||(22284007-22284131)
chr6 (207-258)||(21814305-21814356)
[»] scaffold0012 (4 HSPs)
scaffold0012 (19-143)||(115751-115875)
scaffold0012 (19-143)||(107934-108058)
scaffold0012 (213-253)||(115642-115682)
scaffold0012 (212-253)||(107836-107877)
[»] scaffold0006 (9 HSPs)
scaffold0006 (19-143)||(109902-110026)
scaffold0006 (19-141)||(168153-168275)
scaffold0006 (19-143)||(218742-218866)
scaffold0006 (19-143)||(56967-57091)
scaffold0006 (19-142)||(144895-145018)
scaffold0006 (19-143)||(139822-139946)
scaffold0006 (213-253)||(168045-168085)
scaffold0006 (213-256)||(144800-144843)
scaffold0006 (205-253)||(139725-139773)
[»] chr1 (23 HSPs)
chr1 (19-143)||(13650061-13650185)
chr1 (19-143)||(20477505-20477629)
chr1 (19-141)||(13670539-13670661)
chr1 (19-143)||(13543377-13543501)
chr1 (19-143)||(20368433-20368557)
chr1 (23-143)||(13420879-13420999)
chr1 (19-143)||(15899155-15899279)
chr1 (19-143)||(19138261-19138385)
chr1 (19-142)||(13655134-13655257)
chr1 (19-143)||(13610339-13610463)
chr1 (19-143)||(13506271-13506395)
chr1 (19-143)||(13684783-13684907)
chr1 (19-143)||(16497101-16497225)
chr1 (19-143)||(16468458-16468582)
chr1 (213-253)||(13670431-13670471)
chr1 (213-253)||(20368324-20368364)
chr1 (213-253)||(20477396-20477436)
chr1 (213-256)||(13655039-13655082)
chr1 (219-253)||(15899338-15899372)
chr1 (205-253)||(13506174-13506222)
chr1 (205-253)||(13610242-13610290)
chr1 (205-253)||(19138442-19138490)
chr1 (205-252)||(13684687-13684734)
[»] chr2 (1 HSPs)
chr2 (19-143)||(38057800-38057924)
[»] scaffold0068 (1 HSPs)
scaffold0068 (19-142)||(40947-41070)


Alignment Details
Target: chr8 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 20814764 - 20814888
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  20814764 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcagtatgattttc 20814863  T
Q  119 tctaatttcaaaaaatgaacctatg 143  Q
    |||||||||||||||| ||||||||    
T  20814864 tctaatttcaaaaaattaacctatg 20814888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 207 - 258
Target Start/End: Original strand, 20814952 - 20815003
Alignment:
Q  207 atgctccaataatagaattaccatacctcttttactgcattatttctctctg 258  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  20814952 atgctccaataatagaattaccataccttttttcctgcattatttctctctg 20815003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 111; Significance: 4e-56; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 26655 - 26533
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||     
T  26655 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcaatatgattttc 26556  T
Q  119 tctaatttcaaaaaatgaaccta 141  Q
    |||||||||||||||||||||||    
T  26555 tctaatttcaaaaaatgaaccta 26533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 26368 - 26327
Alignment:
Q  213 caataatagaattacc-atacctcttttactgcattatttct 253  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  26368 caataatagaattacccatacctcttttactgcattatttct 26327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 109; Significance: 7e-55; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 7780 - 7904
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||| ||||||||||     
T  7780 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtgatgccatattgtcttcaagttgtccatatccttcagtatgattttc 7879  T
Q  119 tctaatttcaaaaaatgaacctatg 143  Q
    |||||||||||||||||||||||||    
T  7880 tctaatttcaaaaaatgaacctatg 7904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 2e-52; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 21814544 - 21814420
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||     
T  21814544 cacaattttcttacaattgttcacttccaacaccttcgatgtttcaaattggtaatgccatattgtcttcaagctggccatatccttcagtatgattttc 21814445  T
Q  119 tctaatttcaaaaaatgaacctatg 143  Q
    |||||||||||||||| ||||||||    
T  21814444 tctaatttcaaaaaattaacctatg 21814420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 22284007 - 22284131
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||  ||||||||||||||||||| |||||||||||||| ||| ||||||     
T  22284007 cacaattttcttacaattgttcacttccaacatcttcaatgttttaaattggggatgccatattgtcttcaagttgtccatatccttcagtaagattttc 22284106  T
Q  119 tctaatttcaaaaaatgaacctatg 143  Q
    |||||||||||||||||||||||||    
T  22284107 tctaatttcaaaaaatgaacctatg 22284131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 207 - 258
Target Start/End: Complemental strand, 21814356 - 21814305
Alignment:
Q  207 atgctccaataatagaattaccatacctcttttactgcattatttctctctg 258  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  21814356 atgctccaataatagaattaccatacctattttactgcattatttctctctg 21814305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 101; Significance: 4e-50; HSPs: 4)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 115875 - 115751
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||  |||||||||     
T  115875 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattgccgatgccatattgtcttcaagctgtccatatccttcaatatgattttc 115776  T
Q  119 tctaatttcaaaaaatgaacctatg 143  Q
    |||||||||||||||||||||||||    
T  115775 tctaatttcaaaaaatgaacctatg 115751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 108058 - 107934
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    |||||||||| |||||||||||||||||||||||||| || ||||||||||||  |||||||||| ||||||| ||| |||||||||  ||||||||||     
T  108058 cacaattttcgtacaattgttcacttccaacatcttcaatttttcaaattggtggtgccatattgacttcaagttgtacatatccttgagtatgattttc 107959  T
Q  119 tctaatttcaaaaaatgaacctatg 143  Q
    |||||||||||||||||||||||||    
T  107958 tctaatttcaaaaaatgaacctatg 107934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 115682 - 115642
Alignment:
Q  213 caataatagaattaccatacctcttttactgcattatttct 253  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  115682 caataatagaattaccatacctcttttactgcattatttct 115642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 107877 - 107836
Alignment:
Q  212 ccaataatagaattaccatacctcttttactgcattatttct 253  Q
    ||||||||||||||| ||||||||||||| |||||| |||||    
T  107877 ccaataatagaattatcatacctcttttattgcattttttct 107836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 101; Significance: 4e-50; HSPs: 9)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 110026 - 109902
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||   |||||||||     
T  110026 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtgatgccatattgtcttcaagatgtccatatccttaaatatgattttc 109927  T
Q  119 tctaatttcaaaaaatgaacctatg 143  Q
    |||||||||||||||||||||||||    
T  109926 tctaatttcaaaaaatgaacctatg 109902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 168275 - 168153
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||  |||||||||     
T  168275 cacaattttcttacaattgttcactttcaacatcttcgatgtttcaaattgctgatgccatattgtcttcaagctgtccatatccttcaatatgattttc 168176  T
Q  119 tctaatttcaaaaaatgaaccta 141  Q
    |||||||||||||||||||||||    
T  168175 tctaatttcaaaaaatgaaccta 168153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 218866 - 218742
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||  ||| |||||     
T  218866 cacaattttgttacaattgttcgcttccaacatcttcgatgtttcaaattggtgatgccatattgtcttcaagctgtccatatccttcaatataattttc 218767  T
Q  119 tctaatttcaaaaaatgaacctatg 143  Q
    |||||||||||||||||||||||||    
T  218766 tctaatttcaaaaaatgaacctatg 218742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #4
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 57091 - 56967
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    |||||||||||||||||||||||||||||||| ||| ||||||| |||||||  ||||||||||| ||||||| |||||||||||||| ||||||||||     
T  57091 cacaattttcttacaattgttcacttccaacagctttgatgttttaaattggcgatgccatattgacttcaagttgtccatatccttcagtatgattttc 56992  T
Q  119 tctaatttcaaaaaatgaacctatg 143  Q
    |||||||||||||||||||||||||    
T  56991 tctaatttcaaaaaatgaacctatg 56967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #5
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 145018 - 144895
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||| ||||||| |||||||||||||| |||| |||||     
T  145018 cacaattttcttacaattgttcacttccaacatcttcaatgtttcaaattggtggtgccatattgacttcaagttgtccatatccttcagtataattttc 144919  T
Q  119 tctaatttcaaaaaatgaacctat 142  Q
    ||||||||||| ||||||||||||    
T  144918 tctaatttcaataaatgaacctat 144895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 139946 - 139822
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| ||| ||||||||||  ||||||||||    
T  139946 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattgccgatgccatattgtcttcaagttgttcatatccttcaatatgattttt 139847  T
Q  119 tctaatttcaaaaaatgaacctatg 143  Q
    ||||| || |||| | |||||||||    
T  139846 tctaaatttaaaagacgaacctatg 139822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 168085 - 168045
Alignment:
Q  213 caataatagaattaccatacctcttttactgcattatttct 253  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  168085 caataatagaattaccatacctcttttactgcattatttct 168045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 144843 - 144800
Alignment:
Q  213 caataatagaattaccatacctcttttactgcattatttctctc 256  Q
    |||||| ||||||||||||||||||||| |||||||||||||||    
T  144843 caataacagaattaccatacctcttttaatgcattatttctctc 144800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 139773 - 139725
Alignment:
Q  205 ggatgctccaataatagaattaccatacctcttttactgcattatttct 253  Q
    |||||||||||||||||||||| ||||||||||| | |||||| |||||    
T  139773 ggatgctccaataatagaattagcatacctctttcagtgcattgtttct 139725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 101; Significance: 4e-50; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 13650185 - 13650061
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  13650185 cacaattttcttacaattgttcacttccaacatcttggatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcaatatgattttt 13650086  T
Q  119 tctaatttcaaaaaatgaacctatg 143  Q
    ||||| || |||||| |||||||||    
T  13650085 tctaaatttaaaaaacgaacctatg 13650061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 20477629 - 20477505
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||  |||||||||     
T  20477629 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattgccgatgccatattgtcttcaagctgtccatatccttcaatatgattttc 20477530  T
Q  119 tctaatttcaaaaaatgaacctatg 143  Q
    |||||||||||||||||||||||||    
T  20477529 tctaatttcaaaaaatgaacctatg 20477505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 13670661 - 13670539
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||  |||||||||     
T  13670661 cacaattttcttacaattgttcactttcaacatcttcgatgtttcaaattgctgatgccatattgtcttcaagctgtccatatccttcaatatgattttc 13670562  T
Q  119 tctaatttcaaaaaatgaaccta 141  Q
    |||||||||||||||||||||||    
T  13670561 tctaatttcaaaaaatgaaccta 13670539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 13543501 - 13543377
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| ||||||||||||||  |||||||||     
T  13543501 cacaattttcttacaattgttcacttccaacatctttgatgtttcaaattggtgatgccatattgtcttcaagttgtccatatccttcaatatgattttc 13543402  T
Q  119 tctaatttcaaaaaatgaacctatg 143  Q
    |||||||||||||| ||||||||||    
T  13543401 tctaatttcaaaaattgaacctatg 13543377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 20368557 - 20368433
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||  ||| |||||     
T  20368557 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattgccgatgccatattgtcttcaagctgtccatatccttcaatatcattttc 20368458  T
Q  119 tctaatttcaaaaaatgaacctatg 143  Q
    |||||||||||||||||||||||||    
T  20368457 tctaatttcaaaaaatgaacctatg 20368433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 23 - 143
Target Start/End: Complemental strand, 13420999 - 13420879
Alignment:
Q  23 attttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttttcta 122  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||  ||||||||| ||||    
T  13420999 attttcttacaattgttcacttccaacatcttcaatgtttcaaattggtgatgccatattgtcttcaagttgtccatatccttcaatatgattttctcta 13420900  T
Q  123 atttcaaaaaatgaacctatg 143  Q
    |||| |||| |||||||||||    
T  13420899 attttaaaagatgaacctatg 13420879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 15899155 - 15899279
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    ||||||||||||||||||||||||||||||||||||| |||||| |||||||| |||||||| |||||||||| ||||||||||||||  |||||||||     
T  15899155 cacaattttcttacaattgttcacttccaacatcttcaatgttttaaattggtgatgccatactgtcttcaagttgtccatatccttcaatatgattttc 15899254  T
Q  119 tctaatttcaaaaaatgaacctatg 143  Q
    ||||||||||| |||||||||||||    
T  15899255 tctaatttcaagaaatgaacctatg 15899279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 19138261 - 19138385
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||  ||||||||||||||||||| ||||||||||||||  ||||||||||    
T  19138261 cacaattttcttacaattgttcacttccaacagcttcgatgtttcaaattggcgatgccatattgtcttcaagttgtccatatccttcaatatgattttt 19138360  T
Q  119 tctaatttcaaaaaatgaacctatg 143  Q
    ||||| || |||||| |||||||||    
T  19138361 tctaaatttaaaaaacgaacctatg 19138385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 142
Target Start/End: Complemental strand, 13655257 - 13655134
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||  |||||||||| ||||||| |||||||||||||| |||| |||||     
T  13655257 cacaattttcttacaattgttcacttccaacatcttcaatgtttcaaattggtggtgccatattgacttcaagttgtccatatccttcagtataattttc 13655158  T
Q  119 tctaatttcaaaaaatgaacctat 142  Q
    ||||||||||| ||||||||||||    
T  13655157 tctaatttcaataaatgaacctat 13655134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 13610463 - 13610339
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||| ||| ||||||||||  ||||||||||    
T  13610463 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggcgatgccatattgtcttcaagttgttcatatccttcaatatgattttt 13610364  T
Q  119 tctaatttcaaaaaatgaacctatg 143  Q
    ||||| || |||| | |||||||||    
T  13610363 tctaaatttaaaagacgaacctatg 13610339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 13506395 - 13506271
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||| ||| ||||||||||  ||||||||||    
T  13506395 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattgacgatgccatattgtcttcaagttgttcatatccttcaatatgattttt 13506296  T
Q  119 tctaatttcaaaaaatgaacctatg 143  Q
    ||||| || |||| | |||||||||    
T  13506295 tctaaatttaaaagacgaacctatg 13506271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 19 - 143
Target Start/End: Complemental strand, 13684907 - 13684783
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    ||||||||||||||||||||||||||||||||||||| || |||||||||||  ||||||||||||||||||| ||| ||||||||||  ||||||||||    
T  13684907 cacaattttcttacaattgttcacttccaacatcttcaatatttcaaattggcgatgccatattgtcttcaagttgttcatatccttcaatatgattttt 13684808  T
Q  119 tctaatttcaaaaaatgaacctatg 143  Q
    ||||| || |||| | |||||||||    
T  13684807 tctaaatttaaaagacgaacctatg 13684783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 16497101 - 16497225
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    |||||||| ||||||||||||||||||||| ||||||||| |||||||||| |  | |||||||||||||||| ||||||| ||||||  |||||||||     
T  16497101 cacaatttgcttacaattgttcacttccaatatcttcgatatttcaaattgatggtaccatattgtcttcaagttgtccatgtccttcaatatgattttc 16497200  T
Q  119 tctaatttcaaaaaatgaacctatg 143  Q
    || ||||| ||||||||| ||||||    
T  16497201 tccaatttgaaaaaatgatcctatg 16497225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 16468458 - 16468582
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    |||||||| ||||||||||||||||||||||||||||  ||||||||||||    | ||| |||||||||||| | ||||| |||||| ||||||||||     
T  16468458 cacaatttgcttacaattgttcacttccaacatcttcactgtttcaaattgacggtaccaaattgtcttcaagttatccatgtccttcagtatgattttc 16468557  T
Q  119 tctaatttcaaaaaatgaacctatg 143  Q
    || ||||| ||||||| | ||||||    
T  16468558 tccaatttgaaaaaattatcctatg 16468582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 13670471 - 13670431
Alignment:
Q  213 caataatagaattaccatacctcttttactgcattatttct 253  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  13670471 caataatagaattaccatacctcttttactgcattatttct 13670431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 20368364 - 20368324
Alignment:
Q  213 caataatagaattaccatacctcttttactgcattatttct 253  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20368364 caataatagaattaccatacctcttttactgcattatttct 20368324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 213 - 253
Target Start/End: Complemental strand, 20477436 - 20477396
Alignment:
Q  213 caataatagaattaccatacctcttttactgcattatttct 253  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20477436 caataatagaattaccatacctcttttactgcattatttct 20477396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 213 - 256
Target Start/End: Complemental strand, 13655082 - 13655039
Alignment:
Q  213 caataatagaattaccatacctcttttactgcattatttctctc 256  Q
    |||||| ||||||||||||||||||||| |||||||||||||||    
T  13655082 caataacagaattaccatacctcttttaatgcattatttctctc 13655039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 219 - 253
Target Start/End: Original strand, 15899338 - 15899372
Alignment:
Q  219 tagaattaccatacctcttttactgcattatttct 253  Q
    |||||||||||||||||||||||||||||||||||    
T  15899338 tagaattaccatacctcttttactgcattatttct 15899372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 13506222 - 13506174
Alignment:
Q  205 ggatgctccaataatagaattaccatacctcttttactgcattatttct 253  Q
    |||||||||||||||||||||| ||||||||||| | |||||| |||||    
T  13506222 ggatgctccaataatagaattagcatacctctttcagtgcattgtttct 13506174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 13610290 - 13610242
Alignment:
Q  205 ggatgctccaataatagaattaccatacctcttttactgcattatttct 253  Q
    |||||||||||||||||||||| ||||||||||| | |||||| |||||    
T  13610290 ggatgctccaataatagaattagcatacctctttcagtgcattgtttct 13610242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 205 - 253
Target Start/End: Original strand, 19138442 - 19138490
Alignment:
Q  205 ggatgctccaataatagaattaccatacctcttttactgcattatttct 253  Q
    |||||||||||||||||||||| ||||||||||| | |||||| |||||    
T  19138442 ggatgctccaataatagaattagcatacctctttcagtgcattgtttct 19138490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 252
Target Start/End: Complemental strand, 13684734 - 13684687
Alignment:
Q  205 ggatgctccaataatagaattaccatacctcttttactgcattatttc 252  Q
    |||||||||||||||||||||| ||||||||||| | |||||| ||||    
T  13684734 ggatgctccaataatagaattagcatacctctttcagtgcattgtttc 13684687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 143
Target Start/End: Original strand, 38057800 - 38057924
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    |||||||||||| ||||||||||||| |||||||||| |||||| |||||||||||||||||||||||||||| ||||||||||||||  ||||||||||    
T  38057800 cacaattttcttgcaattgttcacttgcaacatcttcaatgttttaaattggtaatgccatattgtcttcaagttgtccatatccttcaatatgattttt 38057899  T
Q  119 tctaatttcaaaaaatgaacctatg 143  Q
    |||||||||||||||||| ||||||    
T  38057900 tctaatttcaaaaaatgatcctatg 38057924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 92; Significance: 9e-45; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 19 - 142
Target Start/End: Original strand, 40947 - 41070
Alignment:
Q  19 cacaattttcttacaattgttcacttccaacatcttcgatgtttcaaattggtaatgccatattgtcttcaagctgtccatatccttcggtatgattttt 118  Q
    |||||||||||||||||||||||||||||| |||||| ||||||||||||||| ||||||||||||||||||| ||| |||||||||| ||||||||||     
T  40947 cacaattttcttacaattgttcacttccaaaatcttcaatgtttcaaattggtgatgccatattgtcttcaagttgttcatatccttcagtatgattttc 41046  T
Q  119 tctaatttcaaaaaatgaacctat 142  Q
    |||||||||||||| |||||||||    
T  41047 tctaatttcaaaaattgaacctat 41070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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