View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8443_low_26 (Length: 240)
Name: NF8443_low_26
Description: NF8443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8443_low_26 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 240
Target Start/End: Complemental strand, 32869833 - 32869611
Alignment:
| Q |
18 |
ccttagtgttgaaacaggtccttatcgctttgtaaaatgaattactactactannnnnnncctttgtaaaatgaaccaagtgatatcgcttattttcaaa |
117 |
Q |
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| T |
32869833 |
ccttagtattgaaacaggtccttatcgctttgtaaaatgaattactactactatttttttcctttgtaaaatgaaccaagtgatatcgcttattttcaaa |
32869734 |
T |
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| Q |
118 |
gaacgtgtattttataccccattcacaattttgaacagaataaacgatatgcaaacataataagcaaaacgaaatcataatagaatgaggaatgaaacaa |
217 |
Q |
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| T |
32869733 |
gaacgtgtattttataccccattcacaattttgaacaaaataaacgatatgcaaacagaataagcaaaacgaaatcataatagaatgaggaacgaaacaa |
32869634 |
T |
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| Q |
218 |
aaaattttggaaagctaaaatac |
240 |
Q |
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||| ||||||||||||||||||| |
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| T |
32869633 |
aaatttttggaaagctaaaatac |
32869611 |
T |
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