View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8443_low_29 (Length: 202)
Name: NF8443_low_29
Description: NF8443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8443_low_29 |
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| [»] scaffold0194 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 146; Significance: 4e-77; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 32542056 - 32541891
Alignment:
| Q |
19 |
cagaagcaacacgtataacgcaaaatctctacttctttccatagactaaatgataaaggttttcatgttactaggtatgatggaagtgtattttatatac |
118 |
Q |
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| T |
32542056 |
cagaagcaacacgtataacgcaaaatctctacttctttccatagactaaatgataaaggttttcatgttcctaggtgtgatagaagtgtattttatatat |
32541957 |
T |
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| Q |
119 |
ctttgttgggtttggtttgcccctcacccctccatatcgtttagattcaacaaaagatcacttttg |
184 |
Q |
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| T |
32541956 |
ctttgttgggtttggtttgccccccacccctccatatcgtttagattcaacaaaagatcacttttg |
32541891 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 66 - 115
Target Start/End: Complemental strand, 9841922 - 9841872
Alignment:
| Q |
66 |
aaatgataaa-ggttttcatgttactaggtatgatggaagtgtattttata |
115 |
Q |
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| T |
9841922 |
aaatgataaatggttttcatgttactgggtatgagggaagtgtattttata |
9841872 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 20 - 69
Target Start/End: Complemental strand, 29049758 - 29049709
Alignment:
| Q |
20 |
agaagcaacacgtataacgcaaaatctctacttctttccatagactaaat |
69 |
Q |
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| T |
29049758 |
agaagcaacacgtaaaacgcaaaatctctacttctttccagaaactaaat |
29049709 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0194 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0194
Description:
Target: scaffold0194; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 73 - 115
Target Start/End: Complemental strand, 30100 - 30058
Alignment:
| Q |
73 |
aaaggttttcatgttactaggtatgatggaagtgtattttata |
115 |
Q |
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| T |
30100 |
aaaggttttcatgttactaggtatgaggggagtgtattttata |
30058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 73 - 115
Target Start/End: Original strand, 44184125 - 44184167
Alignment:
| Q |
73 |
aaaggttttcatgttactaggtatgatggaagtgtattttata |
115 |
Q |
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| T |
44184125 |
aaaggttttcatgttactgggtatgagggaagtgtattttata |
44184167 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 7765339 - 7765389
Alignment:
| Q |
66 |
aaatgataaa-ggttttcatgttactaggtatgatggaagtgtattttata |
115 |
Q |
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| T |
7765339 |
aaatgataaatggctttcatgttacttggtatgagggaagtgtattttata |
7765389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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