View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8443_low_3 (Length: 654)
Name: NF8443_low_3
Description: NF8443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8443_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 208; Significance: 1e-113; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 1267713 - 1267949
Alignment:
| Q |
18 |
catcaatgtaggtcttctttccttttatccccaacacaactaattcactatccatttttaagataatttatctcatatggcattgttatattgatggggt |
117 |
Q |
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| T |
1267713 |
catcaatgtaggtcttctttccttttatccccaacacaactaattcactatccatttttaagataatttatctcatacggcattgttatattgatcgggt |
1267812 |
T |
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| Q |
118 |
gtaccacgccaatgctttagtgcaacactcgcggttacatttcccattcgcttatctagggaacaaacttccaaccgaaaatgagtgcaatattcaagca |
217 |
Q |
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| T |
1267813 |
gtaccacgccaatgctttagtgcaacactcgtggttacatttcccattcgcttatccagggaacaaacttccaaccgaaaatgagagcaatattcaagca |
1267912 |
T |
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| Q |
218 |
atgagtaaatattactttcctcttttcaaattggaaatg |
256 |
Q |
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| T |
1267913 |
atgagtaaatattactttc--cttttcaaattggaaatg |
1267949 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 473 - 636
Target Start/End: Original strand, 1265597 - 1265759
Alignment:
| Q |
473 |
tggaaggtgtcatatggtcattttaatacaaatggtgtagaatgcaagaattgtcacatttttgttaagttagcacatatttatgatggggatgccttgg |
572 |
Q |
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| T |
1265597 |
tggaaggtgtcacatggtcattctgatacaaatggtgtagaatgtaagatttgtcacaattttgttaagttagcacaaatttataatggg-atgccttgg |
1265695 |
T |
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| Q |
573 |
ttcatctttcttttggattgttaattgtatttatttgttaaattattccttaattttccatgtt |
636 |
Q |
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| T |
1265696 |
ttcatctttcttttggattgttagttgtatttatttgtaaaattattcctcaattttccttgtt |
1265759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 555 - 639
Target Start/End: Original strand, 1267947 - 1268031
Alignment:
| Q |
555 |
atgatggggatgccttggttcatctttcttttggattgttaattgtatttatttgttaaattattccttaattttccatgtttgt |
639 |
Q |
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| T |
1267947 |
atgatggggatgccttggttcatctttcttttggattgttaattgtatttatttgttaaattattccttaattttccatgtttgt |
1268031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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