View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8443_low_8 (Length: 491)
Name: NF8443_low_8
Description: NF8443
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8443_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 1 - 474
Target Start/End: Complemental strand, 5266417 - 5265943
Alignment:
| Q |
1 |
gagtgtttgaattttgagccataatttcatgtattatttcttaattgtctttggattttagttttaaggtgaagtttattgagctagaaatgaatatgga |
100 |
Q |
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| T |
5266417 |
gagtgtttgaattttgagccataatttcatgtattatttcttaattgtctttgcattttagttttaaggtgaagtttattaagcgagaaatgaatatgga |
5266318 |
T |
|
| Q |
101 |
tgttgatactttttt-agtggcatgatcgtagtttagtaaccatattttaattaatgatatcatatacctatgtagtgcttcttttcttgaaaaaataat |
199 |
Q |
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| T |
5266317 |
tgcttatactttttttagtggcatgatcgtagtttagtaaccatattttaattaatgatatcatatacctatttagtgcttcttttcttgaaaaaataat |
5266218 |
T |
|
| Q |
200 |
acctctgcatcttgtcttatttactttgttttttatttcttatctatagaccgtaagcatttgattttgagacgtaaatataaggttgaaaaatgaattg |
299 |
Q |
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| T |
5266217 |
acctctgcatcttgtcttatttactttgttttttatttcttatctatagaccgtaagcatttgattttgagacgtaaatataaggttgaaaaatgaattg |
5266118 |
T |
|
| Q |
300 |
acaagtcaaatatatgtccctaccaccctatgaaatgagtatgtctttgttctatttatctaactctatttactgttaatttatgaaatagatagatctg |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5266117 |
acaagtcaaatatatgtccctaccaccctatgaaatgagtatgtctttgttctatttatctaactctatttactgttaatttatgaaatagatagatctg |
5266018 |
T |
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| Q |
400 |
aagtggaaaattagtggtgctcattgatgaggttcacttactaaaattagtggtgattattgatgagaatctcat |
474 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5266017 |
aagtggaaaattagtggtgctcattgatgaggttcacttactaaaattagtggtgattattgatgagaatctcat |
5265943 |
T |
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