View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8444_low_2 (Length: 445)
Name: NF8444_low_2
Description: NF8444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8444_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 256
Target Start/End: Original strand, 49205116 - 49205354
Alignment:
| Q |
18 |
atataaagctacattatatcctcgttaacaatggttttcataccttcgatattttctcaacaacaaatcaatacaagaggactctatttcaaaatcttgt |
117 |
Q |
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| T |
49205116 |
atataaagctacattgtatcctcgttaacaatggctttcataccttcgatattttatcagcaacaaatcaataaaagaggactctatttcaaaatcttgt |
49205215 |
T |
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| Q |
118 |
gcaccctccatctccatgagtttatctttgaaggaacatacacctttttcattaagacctaactccgtccaggcctcaattttataaccattaaaaggta |
217 |
Q |
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| T |
49205216 |
gcaccctccatctccatgagtttatctttgaaggaacatacacctttttcattaagacctaactccgtccaggcctcaactttataaccattaaaaggta |
49205315 |
T |
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| Q |
218 |
acacactacaaatcaaggacagggtgtaggattagtgga |
256 |
Q |
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| T |
49205316 |
acacactacaaatcaaggacagggtgtaggattagtgga |
49205354 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 8333136 - 8333067
Alignment:
| Q |
85 |
tcaatacaagaggactctatttcaaaatcttgtgcaccctccatctccatgagtttatctttgaaggaac |
154 |
Q |
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| T |
8333136 |
tcaatataagaggtctcaacttcaaaatcttgtgcacccaccatctcctagagtttatctttgtaggaac |
8333067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 85 - 142
Target Start/End: Complemental strand, 32191697 - 32191640
Alignment:
| Q |
85 |
tcaatacaagaggactctatttcaaaatcttgtgcaccctccatctccatgagtttat |
142 |
Q |
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| T |
32191697 |
tcaatataagatgactctatttcaaaattgtgttcaccctccatcttcacgagtttat |
32191640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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