View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8444_low_3 (Length: 402)

Name: NF8444_low_3
Description: NF8444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8444_low_3
NF8444_low_3
[»] chr3 (13 HSPs)
chr3 (1-384)||(28568249-28568649)
chr3 (1-286)||(28580142-28580427)
chr3 (1-286)||(28575089-28575378)
chr3 (14-285)||(26316160-26316430)
chr3 (1-213)||(28586299-28586511)
chr3 (14-179)||(20618506-20618671)
chr3 (306-384)||(49090936-49091014)
chr3 (303-384)||(45910872-45910953)
chr3 (305-384)||(1423203-1423282)
chr3 (304-384)||(3572012-3572092)
chr3 (304-384)||(20590981-20591061)
chr3 (304-340)||(44903046-44903082)
chr3 (246-286)||(28586531-28586571)
[»] scaffold1029 (1 HSPs)
scaffold1029 (44-286)||(3086-3324)
[»] scaffold0889 (1 HSPs)
scaffold0889 (1-274)||(4358-4636)
[»] scaffold0870 (1 HSPs)
scaffold0870 (1-274)||(4562-4840)
[»] scaffold1033 (1 HSPs)
scaffold1033 (98-286)||(3086-3270)
[»] chr6 (7 HSPs)
chr6 (1-203)||(24071770-24071972)
chr6 (304-384)||(11767230-11767310)
chr6 (304-385)||(4062424-4062505)
chr6 (302-384)||(22818266-22818348)
chr6 (313-384)||(13181368-13181439)
chr6 (304-360)||(17972074-17972130)
chr6 (315-384)||(17386011-17386080)
[»] chr7 (6 HSPs)
chr7 (304-384)||(21370678-21370758)
chr7 (314-384)||(18111190-18111260)
chr7 (304-385)||(11364861-11364942)
chr7 (304-384)||(36057173-36057252)
chr7 (310-382)||(2476497-2476568)
chr7 (304-384)||(40644605-40644685)
[»] scaffold0003 (1 HSPs)
scaffold0003 (303-384)||(146677-146758)
[»] chr5 (2 HSPs)
chr5 (304-384)||(3277865-3277944)
chr5 (304-384)||(34504540-34504620)
[»] chr8 (4 HSPs)
chr8 (304-384)||(28178837-28178917)
chr8 (304-384)||(13704276-13704356)
chr8 (304-380)||(42796330-42796406)
chr8 (307-375)||(9293800-9293868)
[»] chr2 (4 HSPs)
chr2 (304-384)||(29997979-29998059)
chr2 (304-384)||(19674567-19674647)
chr2 (304-385)||(45532951-45533032)
chr2 (315-383)||(28841993-28842060)
[»] chr1 (4 HSPs)
chr1 (304-384)||(27300443-27300523)
chr1 (304-384)||(41077877-41077958)
chr1 (304-384)||(34079825-34079905)
chr1 (305-351)||(29548329-29548375)
[»] chr4 (5 HSPs)
chr4 (312-384)||(9808785-9808857)
chr4 (304-384)||(9810471-9810551)
chr4 (304-358)||(17034488-17034542)
chr4 (317-384)||(7652695-7652762)
chr4 (320-384)||(17787336-17787400)
[»] scaffold0462 (1 HSPs)
scaffold0462 (304-353)||(11538-11587)


Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 28568249 - 28568649
Alignment:
Q  1 caaatgcagattttcaagagccacttttatttcctcagcaaaatagtgttcaataccaaacctttggataatatcaatcaaataaaaactctccatggga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||    
T  28568249 caaatgcagattttcaagagccacttttatttcctcagcaaaatagtgctcaataccaaacctttggataatatccatcaaataaaaactctccatcgga 28568348  T
Q  101 tcttcgattttaacaagtttcttataaacttgcttaaatatcaaagcttgtttgacatatgtagcatcctgaaaatgtaaaagtgcagattaatcagaac 200  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  | |||||| ||| ||||| |||||||||| |||||||     
T  28568349 tcttcgattttaacaagtttcttataaacttgcttaaatattaaagcttgtttgacatatacaacatcctaaaattgtaagagtgcagattgatcagaat 28568448  T
Q  201 attgcaataaaaacatat-tg-------caaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattctagaaattaatgc------ 286  Q
    |||| ||||||   |||| ||        |||||||||| |  |||||||||| ||||||||||||||||||||||||||||||||||||||||          
T  28568449 attgaaataaagctatatatgttgtaactaaatttagaatagctgtatatattcgtacttcaattaaaatacttaccattctagaaattaatgctttgat 28568548  T
Q  287 ---aaattaaaacagacttgcactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccga 383  Q
       ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28568549 agtaaattaaaacagactcgcactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccga 28568648  T
Q  384 t 384  Q
    |    
T  28568649 t 28568649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 28580142 - 28580427
Alignment:
Q  1 caaatgcagattttcaagagccacttttatttcctcagcaaaatagtgttcaataccaaacctttggataatatcaatcaaataaaaactctccatggga 100  Q
    |||||| || ||||||||||||||||| || ||||| | ||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||    
T  28580142 caaatgtagtttttcaagagccactttgatctcctcggtaaagtagtgttcaatgccaaacctttggataatatcaatcaaataaaaactttccatcgga 28580241  T
Q  101 tcttcgattttaacaagtttcttataaacttgcttaaatatcaaagcttgtttgacatatgtagcatcctgaaaatgtaaaagtgcagattaatcagaac 200  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||| ||||| ||||||||    
T  28580242 tcttcgattttaacaagtttcttataaacttgcttgaatatcaaagcttgtttgacatatgtaacgtcctgaaaatgtaaaagtgtagattgatcagaac 28580341  T
Q  201 attgcaataaaaacatattgcaaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattctagaaattaatgc 286  Q
    ||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  28580342 attgcaataaaaagatattctaaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattctggaaattaatgc 28580427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 1 - 286
Target Start/End: Original strand, 28575089 - 28575378
Alignment:
Q  1 caaatgcagattttcaagagccacttttatttcctcagcaaaatagtgttcaataccaaacctttggataatatcaatcaaataaaaactctccatggga 100  Q
    |||||| || ||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||| | |    
T  28575089 caaatgtagcttttcaagagccactttgatctcctcagcaaaatagtgttcaatgccaaacctttggatgatatcgatcaaataaaaactctccatcgaa 28575188  T
Q  101 tcttcgattttaacaagtttcttataaacttgcttaaatatcaaagcttgtttgacatatgtagcatcctgaaaatgtaaaagtgcagattaatcagaac 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| ||||||||||| || |||||||||||| ||||||||    
T  28575189 tcttcgattttaacaagtttcttataaacttgcttaaatatcaaagcttgcttaacatatgtaacatcctgaaaaagtcaaagtgcagattgatcagaac 28575288  T
Q  201 attgcaataaaaacatattg----caaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattctagaaattaatgc 286  Q
    |||| ||||||   || |||     || ||||||| || ||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  28575289 attgaaataaagctatgttgtaactaagtttagaataactgtatatatttgtacttcagttaaaatacttaccattctagaaattaatgc 28575378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 14 - 285
Target Start/End: Original strand, 26316160 - 26316430
Alignment:
Q  14 tcaagagccacttttatttcctcagcaaaatagtgttcaataccaaacctttggataatatcaatcaaataaaaactctccatgggatcttcgattttaa 113  Q
    |||||||||||||| || || ||| |||| |||||||||||   || ||||||||| ||||| |||||||||||||||||||| |||| |||||||||||    
T  26316160 tcaagagccactttgatctcttcaacaaagtagtgttcaatgttaagcctttggatgatatcgatcaaataaaaactctccatcggatattcgattttaa 26316259  T
Q  114 caagtttcttataaacttgcttaaatatcaaagcttgtttgacatatgtagcatcctgaaaatgtaaaagtgcagattaatcagaacattgcaataaaaa 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| | || ||||||||| ||| ||||    
T  26316260 caagtttcttataaacttgcttaaatatcaaagcttgtttgacatatgtaacatcctgaaaatgtaaaagtgcagaatgatgagaacattgaaat-aaaa 26316358  T
Q  214 catattgcaaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattctagaaattaatg 285  Q
     |||||| |||| |||||||| | |||||||||||||||||||||||||||||||||||||| |||||||||    
T  26316359 tatattgtaaatctagaacaactttatatatttgtacttcaattaaaatacttaccattctataaattaatg 26316430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 161; E-Value: 9e-86
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 28586299 - 28586511
Alignment:
Q  1 caaatgcagattttcaagagccacttttatttcctcagcaaaatagtgttcaataccaaacctttggataatatcaatcaaataaaaactctccatggga 100  Q
    |||||| || ||||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |||    
T  28586299 caaatgtagcttttcaagagccactttgatctcctcagcaaaatagtgttcaatgccaaacctttggataatatcgatcaaataaaaactttccatcgga 28586398  T
Q  101 tcttcgattttaacaagtttcttataaacttgcttaaatatcaaagcttgtttgacatatgtagcatcctgaaaatgtaaaagtgcagattaatcagaac 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||     
T  28586399 tcttcaattttaacaagtttcttataaacttgcttaaatatcaaagcttgtttgacatatgtaacatcctgaaaatgtaaaagtgcagattgatcagaat 28586498  T
Q  201 attgcaataaaaa 213  Q
    |||| ||||||||    
T  28586499 attgaaataaaaa 28586511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 20618506 - 20618671
Alignment:
Q  14 tcaagagccacttttatttcctcagcaaaatagtgttcaataccaaacctttggataatatcaatcaaataaaaactctccatgggatcttcgattttaa 113  Q
    |||||||||||||| ||||||||| |||| |||||||||||||||| ||||||||| || |||||||||| |||| ||||  | ||||||||  |  |||    
T  20618506 tcaagagccactttgatttcctcaacaaagtagtgttcaataccaagcctttggatgatgtcaatcaaatgaaaattctcagttggatcttcactagtaa 20618605  T
Q  114 caagtttcttataaacttgcttaaatatcaaagcttgtttgacatatgtagcatcctgaaaatgta 179  Q
    |||||||||| | |||||||||| | ||||||||||| ||||||||  ||||||||||||||||||    
T  20618606 caagtttcttgtgaacttgcttacacatcaaagcttgcttgacataaatagcatcctgaaaatgta 20618671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 306 - 384
Target Start/End: Original strand, 49090936 - 49091014
Alignment:
Q  306 ctagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||   | ||||||||||||||||||||    
T  49090936 ctagtgcagaaaacactttttaaatcaggtaaaaaagactttttaaatcggttctccacccgacttataggtggccgat 49091014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 303 - 384
Target Start/End: Original strand, 45910872 - 45910953
Alignment:
Q  303 gcactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    |||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||   |||||| |||||||||||||||    
T  45910872 gcactagtgcagaaaacactttttaaatcaggtgaaaaagactttttaaatcggttctgtatccgatttataggtggccgat 45910953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 305 - 384
Target Start/End: Original strand, 1423203 - 1423282
Alignment:
Q  305 actagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    ||||||||||||| ||||||||||||  ||| ||||||||||||||||||||||  | ||||||||||||||||||||||    
T  1423203 actagtacagaaatcactttttaaatggggtgaaaatgactttttaaatcggttgtacatccgacttataggtggccgat 1423282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 3572092 - 3572012
Alignment:
Q  304 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    ||||||| |||||||||||||||||||||||| ||  |||||||||||||||| | |  ||||||||||||||||||||||    
T  3572092 cactagtgcagaaaacactttttaaatcaggtgaatttgactttttaaatcgggtgaccatccgacttataggtggccgat 3572012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 20590981 - 20591061
Alignment:
Q  304 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    ||||||| |||||||||| ||||||||||||| ||  |||||||||||||||| | |  |||||| |||||||| ||||||    
T  20590981 cactagtgcagaaaacaccttttaaatcaggtgaatttgactttttaaatcgggtgatcatccgatttataggtagccgat 20591061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 304 - 340
Target Start/End: Original strand, 44903046 - 44903082
Alignment:
Q  304 cactagtacagaaaacactttttaaatcaggtaaaaa 340  Q
    ||||||| |||||||||||||||||||||||||||||    
T  44903046 cactagtgcagaaaacactttttaaatcaggtaaaaa 44903082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 286
Target Start/End: Original strand, 28586531 - 28586571
Alignment:
Q  246 tgtacttcaattaaaatacttaccattctagaaattaatgc 286  Q
    |||||| |||||||| ||||||||||||| |||||||||||    
T  28586531 tgtactccaattaaattacttaccattctggaaattaatgc 28586571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1029 (Bit Score: 173; Significance: 6e-93; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 44 - 286
Target Start/End: Complemental strand, 3324 - 3086
Alignment:
Q  44 tagtgttcaataccaaacctttggataatatcaatcaaataaaaactctccatgggatcttcgattttaacaagtttcttataaacttgcttaaatatca 143  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  3324 tagtgttcaatgccaaacctttggataatatcaatcaaataaaaactttccatcggatcttcgattttaacaagtttcttataaacttgcttaaatatca 3225  T
Q  144 aagcttgtttgacatatgtagcatcctgaaaatgtaaaagtgcagattaatcagaacattgcaataaaaacatattgcaaatttagaacaattgtatata 243  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| ||||||   |||||  |||||| |||||  ||||||||    
T  3224 aagcttgtttgacatatgtagcatcctgaaaatgtaaaagtgcagattgatcagtactttgaaataaa---atattttaaattt-gaacagctgtatata 3129  T
Q  244 tttgtacttcaattaaaatacttaccattctagaaattaatgc 286  Q
    ||||||||||||||||||||||||||||||| |||||||||||    
T  3128 tttgtacttcaattaaaatacttaccattctggaaattaatgc 3086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0889 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: scaffold0889
Description:

Target: scaffold0889; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 4636 - 4358
Alignment:
Q  1 caaatgcagattttcaagagccacttttatttcctcagcaaaatagtgttcaataccaaacctttggataatatcaatcaaataaaaactctccatggga 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4636 caaatgcagattttcaagagccacatttatttcctcagcaaaatagtgttcaataccaaacctttggataatatcgatcaaataaaaactctccatggga 4537  T
Q  101 tcttcgattttaacaagtttcttataaacttgcttaaatatcaaagcttgtttgacatatgtagcatcctgaaaatgtaaaagtgcagattaatcagaac 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  | |||||| |||||||||||||||  ||| ||||||||    
T  4536 tcttcgattttaacaagtttcttataaactttcttaaatatcaaagcttgtttgacatataaaacatcctaaaaatgtaaaagtgc--attgatcagaac 4439  T
Q  201 attgca---ataaaaacatattg----caaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattct 274  Q
    |||| |   ||||||  || |||     |||||||||| || |||||||||| ||| ||||||||||||||||||||||||    
T  4438 attgaaattataaaactatgttgtaaataaatttagaataactgtatatattggtatttcaattaaaatacttaccattct 4358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0870 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: scaffold0870
Description:

Target: scaffold0870; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 4840 - 4562
Alignment:
Q  1 caaatgcagattttcaagagccacttttatttcctcagcaaaatagtgttcaataccaaacctttggataatatcaatcaaataaaaactctccatggga 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  4840 caaatgcagattttcaagagccacatttatttcctcagcaaaatagtgttcaataccaaacctttggataatatcgatcaaataaaaactctccatggga 4741  T
Q  101 tcttcgattttaacaagtttcttataaacttgcttaaatatcaaagcttgtttgacatatgtagcatcctgaaaatgtaaaagtgcagattaatcagaac 200  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||  | |||||| |||||||||||||||  ||| ||||||||    
T  4740 tcttcgattttaacaagtttcttataaactttcttaaatatcaaagcttgtttgacatataaaacatcctaaaaatgtaaaagtgc--attgatcagaac 4643  T
Q  201 attgca---ataaaaacatattg----caaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattct 274  Q
    |||| |   ||||||  || |||     |||||||||| || |||||||||| ||| ||||||||||||||||||||||||    
T  4642 attgaaattataaaactatgttgtaaataaatttagaataactgtatatattggtatttcaattaaaatacttaccattct 4562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1033 (Bit Score: 131; Significance: 8e-68; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 131; E-Value: 8e-68
Query Start/End: Original strand, 98 - 286
Target Start/End: Complemental strand, 3270 - 3086
Alignment:
Q  98 ggatcttcgattttaacaagtttcttataaacttgcttaaatatcaaagcttgtttgacatatgtagcatcctgaaaatgtaaaagtgcagattaatcag 197  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3270 ggatcttcgattttaacaagtttcttataaacttgcttaaatatcaaagcttgtttgacatatgtagcatcctgaaaatgtaaaagtgcagattgatcag 3171  T
Q  198 aacattgcaataaaaacatattgcaaatttagaacaattgtatatatttgtacttcaattaaaatacttaccattctagaaattaatgc 286  Q
     || ||| ||||||   |||||  |||||| |||||  ||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  3170 tactttgaaataaa---atattttaaattt-gaacagctgtatatatttgtacttcaattaaaatacttaccattctggaaattaatgc 3086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 4e-63; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 24071770 - 24071972
Alignment:
Q  1 caaatgcagattttcaagagccacttttatttcctcagcaaaatagtgttcaataccaaacctttggataatatcaatcaaataaaaactctccatggga 100  Q
    ||||||||  |||||||||||| |||| || || ||| |||| |||||||||||  ||||| ||||||| ||||| ||||||||||||| |||||| |||    
T  24071770 caaatgcaagttttcaagagccgctttgatctcgtcaacaaagtagtgttcaatgtcaaacttttggatgatatcgatcaaataaaaacactccatcgga 24071869  T
Q  101 tcttcgattttaacaagtttcttataaacttgcttaaatatcaaagcttgtttgacatatgtagcatcctgaaaatgtaaaagtgcagattaatcagaac 200  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| ||| ||||||||    
T  24071870 tcttcgattttaacaagtttctcataaacttgcttaaatatcaaagcttgtttgacataagtaacatcctgaaaatgtaaaagtgcatattgatcagaac 24071969  T
Q  201 att 203  Q
    |||    
T  24071970 att 24071972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 11767310 - 11767230
Alignment:
Q  304 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11767310 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 11767230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 304 - 385
Target Start/End: Complemental strand, 4062505 - 4062424
Alignment:
Q  304 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatg 385  Q
    ||||||| |||||||||||||||||||||||| ||  |||||||||||||||| | |  |||||||||||||||||||||||    
T  4062505 cactagtgcagaaaacactttttaaatcaggtgaatttgactttttaaatcgggtgaccatccgacttataggtggccgatg 4062424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 302 - 384
Target Start/End: Original strand, 22818266 - 22818348
Alignment:
Q  302 tgcactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    |||||| ||| |||||| |||| ||||||  ||| ||||||||||||||||| |||||| |||||||||||||||||||||||    
T  22818266 tgcactggtatagaaaatacttcttaaatggggtgaaaatgactttttaaataggttcatgatccgacttataggtggccgat 22818348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 313 - 384
Target Start/End: Complemental strand, 13181439 - 13181368
Alignment:
Q  313 agaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    |||||| ||||||||||| |||| |||| ||||||||||||||||||   |||||| |||||||||||||||    
T  13181439 agaaaaaactttttaaattaggtgaaaaagactttttaaatcggttctgtatccgatttataggtggccgat 13181368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 304 - 360
Target Start/End: Original strand, 17972074 - 17972130
Alignment:
Q  304 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttca 360  Q
    |||||| ||||||||||||||||||||  ||| ||||||| ||||||||||||||||    
T  17972074 cactagcacagaaaacactttttaaatggggtgaaaatgaatttttaaatcggttca 17972130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 315 - 384
Target Start/End: Original strand, 17386011 - 17386080
Alignment:
Q  315 aaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    ||||||||||||||||  ||  |||||||||||||||||||||||   |||||| |||||| ||| ||||    
T  17386011 aaaacactttttaaatggggcgaaaatgactttttaaatcggttctgtatccgatttatagatggtcgat 17386080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 5e-38; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 5e-38
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 21370678 - 21370758
Alignment:
Q  304 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21370678 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 21370758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 314 - 384
Target Start/End: Original strand, 18111190 - 18111260
Alignment:
Q  314 gaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    |||||||||||||||||||| | |||||||||||||||||||||||| ||||||| |||||||||||||||    
T  18111190 gaaaacactttttaaatcagatgaaaatgactttttaaatcggttcatgatccgatttataggtggccgat 18111260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 385
Target Start/End: Complemental strand, 11364942 - 11364861
Alignment:
Q  304 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatg 385  Q
    ||||||| |||||||||||||||||||||||| ||  |||||||||||||||| | |  |||||| ||||||||||||||||    
T  11364942 cactagtgcagaaaacactttttaaatcaggtgaatttgactttttaaatcgggtgaccatccgatttataggtggccgatg 11364861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 36057252 - 36057173
Alignment:
Q  304 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    |||||||||| ||||||||||||||||  ||| | | |||||||||||||||| ||| |||||||||||||||||||||||    
T  36057252 cactagtacaaaaaacactttttaaatggggtgata-tgactttttaaatcgggtcacgatccgacttataggtggccgat 36057173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 310 - 382
Target Start/End: Complemental strand, 2476568 - 2476497
Alignment:
Q  310 tacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccg 382  Q
    ||||||||| |||||||||||  ||| ||||||||||||||| ||||||| | ||||||||||||||||||||    
T  2476568 tacagaaaatactttttaaatggggtgaaaatgactttttaagtcggttc-atatccgacttataggtggccg 2476497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 40644605 - 40644685
Alignment:
Q  304 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    ||||||| ||||||| | |||||||||||||| ||  |||||||||||||||| | |  ||||||||||||||||||||||    
T  40644605 cactagtgcagaaaatattttttaaatcaggtgaatttgactttttaaatcgggtgaccatccgacttataggtggccgat 40644685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 303 - 384
Target Start/End: Complemental strand, 146758 - 146677
Alignment:
Q  303 gcactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  146758 gcactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttaaagatccgacttataggtggccgat 146677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 3277944 - 3277865
Alignment:
Q  304 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    ||||||| |||||||||||||||||||||||| |||||||||||||||||| ||||| |||||||||||||||||||||||    
T  3277944 cactagtgcagaaaacactttttaaatcaggtgaaaatgactttttaaatc-gttcatgatccgacttataggtggccgat 3277865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 34504620 - 34504540
Alignment:
Q  304 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    ||||||| |||||||||||||||||||||||| ||  |||||||||||||||| | |  ||||||||||||||||||||||    
T  34504620 cactagtgcagaaaacactttttaaatcaggtgaatttgactttttaaatcgggtgaccatccgacttataggtggccgat 34504540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 28178917 - 28178837
Alignment:
Q  304 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||  ||||||| |||||||||||||||    
T  28178917 cactagtacagaaaacactttttaaatcaggtgaaaataactttttaagtcggttctggatccgatttataggtggccgat 28178837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 13704356 - 13704276
Alignment:
Q  304 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    ||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||   |||||| |||||||||||||||    
T  13704356 cactagtgcagaaaacactttttaaatcaggtgaaaaagactttttaaatcggttctgtatccgatttataggtggccgat 13704276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 380
Target Start/End: Complemental strand, 42796406 - 42796330
Alignment:
Q  304 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggc 380  Q
    ||||||| || || |||||||||||||||||| |||||||| ||||||||||||||   |||||| |||||||||||    
T  42796406 cactagtgcaaaatacactttttaaatcaggtgaaaatgaccttttaaatcggttctgtatccgatttataggtggc 42796330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 375
Target Start/End: Complemental strand, 9293868 - 9293800
Alignment:
Q  307 tagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttatag 375  Q
    ||||| ||||||||||||||||||  |   |||||||||||||||||||||||| ||||||| ||||||    
T  9293868 tagtatagaaaacactttttaaatgggaagaaaatgactttttaaatcggttcatgatccgatttatag 9293800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 29998059 - 29997979
Alignment:
Q  304 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    ||||||| |||||||||||||||||| | ||| |||||||||||||||||| ||||| |||||||||||||||||||||||    
T  29998059 cactagtgcagaaaacactttttaaagcgggtgaaaatgactttttaaatcagttcatgatccgacttataggtggccgat 29997979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 304 - 384
Target Start/End: Original strand, 19674567 - 19674647
Alignment:
Q  304 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    ||||||| |||||||||||||||||||||||| |||| ||||||||||||||||||   |||||| |||||||||||||||    
T  19674567 cactagtgcagaaaacactttttaaatcaggtgaaaaagactttttaaatcggttctgtatccgatttataggtggccgat 19674647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 304 - 385
Target Start/End: Complemental strand, 45533032 - 45532951
Alignment:
Q  304 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgatg 385  Q
    ||||||| |||||||||||||||||||||||| ||  |||||||||||||||| | |  |||||||||||||||||||||||    
T  45533032 cactagtgcagaaaacactttttaaatcaggtgaatttgactttttaaatcgggtgaccatccgacttataggtggccgatg 45532951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 315 - 383
Target Start/End: Complemental strand, 28842060 - 28841993
Alignment:
Q  315 aaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccga 383  Q
    |||||||||||||| |  ||| ||||||||||||||| ||||||| | |||||||||||||||| ||||    
T  28842060 aaaacactttttaagtggggtgaaaatgactttttaagtcggttc-atatccgacttataggtgaccga 28841993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 57; Significance: 1e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 27300523 - 27300443
Alignment:
Q  304 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    |||||||||||||||||||||||||||||||| ||||| ||||||||| |||||||  ||||||| |||||||||||||||    
T  27300523 cactagtacagaaaacactttttaaatcaggtgaaaattactttttaagtcggttctggatccgatttataggtggccgat 27300443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 41077958 - 41077877
Alignment:
Q  304 cactagtacagaaaacactttttaaatcagg-taaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    |||||||||||||||||||||||||||  || | ||||||||||| ||||||  |||| |||||||||||||||||||||||    
T  41077958 cactagtacagaaaacactttttaaatgggggtgaaaatgactttgtaaatccattcatgatccgacttataggtggccgat 41077877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 34079905 - 34079825
Alignment:
Q  304 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    ||||||| |||||||||||||||||||||||| |||| |||||||||||||||||    ||| || |||||||||||||||    
T  34079905 cactagtgcagaaaacactttttaaatcaggtgaaaaagactttttaaatcggttatgtatctgatttataggtggccgat 34079825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 305 - 351
Target Start/End: Original strand, 29548329 - 29548375
Alignment:
Q  305 actagtacagaaaacactttttaaatcaggtaaaaatgactttttaa 351  Q
    ||||||| ||||||||||||||||||  ||| |||||||||||||||    
T  29548329 actagtatagaaaacactttttaaatagggtgaaaatgactttttaa 29548375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 312 - 384
Target Start/End: Complemental strand, 9808857 - 9808785
Alignment:
Q  312 cagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||| |  ||||| || ||||||||||||    
T  9808857 cagaaaacactttttaaatcaggtgaaaaagactttttaaatcggttctatttccgatttgtaggtggccgat 9808785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 304 - 384
Target Start/End: Complemental strand, 9810551 - 9810471
Alignment:
Q  304 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    ||||||| |||||||||||||||||||||||| |||| || ||||||||||||||    |||||| |||||||||||||||    
T  9810551 cactagtgcagaaaacactttttaaatcaggtgaaaaagaatttttaaatcggttttgtatccgatttataggtggccgat 9810471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 358
Target Start/End: Complemental strand, 17034542 - 17034488
Alignment:
Q  304 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaatcggtt 358  Q
    ||||||||||||||||||||||||| || | | ||||||||||||||||||||||    
T  17034542 cactagtacagaaaacactttttaagtcggatgaaaatgactttttaaatcggtt 17034488  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 317 - 384
Target Start/End: Original strand, 7652695 - 7652762
Alignment:
Q  317 aacactttttaaatcaggtaaaaatgactttttaaatcggttcaagatccgacttataggtggccgat 384  Q
    ||||||||||||||||||| ||  |||| ||||||||||| | |  ||||||||||||||||||||||    
T  7652695 aacactttttaaatcaggtgaatttgaccttttaaatcgggtgaccatccgacttataggtggccgat 7652762  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 384
Target Start/End: Original strand, 17787336 - 17787400
Alignment:
Q  320 actttttaaatcaggtaaaaatgactttttaaatcggttcaag-atccgacttataggtggccgat 384  Q
    |||||||||||  ||| |||||||||||||||||| | ||| | ||||||||||||||||||||||    
T  17787336 actttttaaatggggtgaaaatgactttttaaatcag-tcatgtatccgacttataggtggccgat 17787400  T

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Target: scaffold0462 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 304 - 353
Target Start/End: Original strand, 11538 - 11587
Alignment:
Q  304 cactagtacagaaaacactttttaaatcaggtaaaaatgactttttaaat 353  Q
    ||||||| |||||||||||||||||||||||| ||  |||||||||||||    
T  11538 cactagtgcagaaaacactttttaaatcaggtgaatttgactttttaaat 11587  T

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