View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8444_low_4 (Length: 310)
Name: NF8444_low_4
Description: NF8444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8444_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 18 - 302
Target Start/End: Complemental strand, 2833738 - 2833455
Alignment:
| Q |
18 |
gttttcttcttagtttcctaactcgttctgttcttacacgctacgttactttgttttgcttcataccaacgagttgaaccaccgagtttagtgnnnnnnn |
117 |
Q |
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| T |
2833738 |
gttttgttcttagtttcataactcgttctgttcttacacgctacgttactttgttttgcttcataccaacgagttgaaccaccgagtttagtgttttttt |
2833639 |
T |
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| Q |
118 |
nnnnagtgttttagttggtggagtagttgtttgggagagatgaaaatgattaagagcttatttgaaacgtgagttttgtgatgtgaagtgaagatgtttc |
217 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2833638 |
ttt-agtgttttagttggtggagtaattgtttgggagagatgaaaatgattaagagcttatttgaaacgtgagttttgtgatgtgaagtgaagatgtttc |
2833540 |
T |
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| Q |
218 |
gttcttcaaaatggagaagtgagaagaataggattaaagctgtttttaagcttcaattcaatgctactaaggtaggttcatctca |
302 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2833539 |
gttcttcaaaatggagaagtgagaagaataggattaaagctgtttttaagcttcaattcaatgctactaaggtaggttcatctca |
2833455 |
T |
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