View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8444_low_5 (Length: 246)
Name: NF8444_low_5
Description: NF8444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8444_low_5 |
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| [»] chr3 (7 HSPs) |
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| [»] scaffold0870 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 9 - 246
Target Start/End: Original strand, 28567921 - 28568158
Alignment:
| Q |
9 |
agcagagatatcgtacatcgttaagacaatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatattt |
108 |
Q |
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|||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28567921 |
agcagagatatcctacatcgttaagactatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgttt |
28568020 |
T |
|
| Q |
109 |
ttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacgcaacaattatagttagtcactatattactaaatatatatattcaaatgttg |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||| | | | |
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| T |
28568021 |
ttcttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcattttattactaaatatatatattcaattttgg |
28568120 |
T |
|
| Q |
209 |
agaggatctgtattaaacaaacctgcatttacgtaatg |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
28568121 |
agaggatctgtattaaacaaacctgcatttacgtaatg |
28568158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 10 - 191
Target Start/End: Original strand, 28574750 - 28574931
Alignment:
| Q |
10 |
gcagagatatcgtacatcgttaagacaatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatatttt |
109 |
Q |
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||||||||||| |||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||| ||||||||||| |||| |
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| T |
28574750 |
gcagagatatcctacatcgttaagactatcttctccgtcaatacttagttgtgatgcttcgtaaagggcaatgaggcctttcaaatcctcaccatgtttt |
28574849 |
T |
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| Q |
110 |
tcttcaaacattcttttgttacacttcaagctgtcaaataaatctacgcaacaattatagttagtcactatattactaaata |
191 |
Q |
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| T |
28574850 |
tcttcaaacattcttttgttgcacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaaata |
28574931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 10 - 188
Target Start/End: Original strand, 28585949 - 28586127
Alignment:
| Q |
10 |
gcagagatatcgtacatcgttaagacaatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatatttt |
109 |
Q |
| |
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||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||| ||||| |||||||| |||||||| |||| |||| |
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| T |
28585949 |
gcagagatatcctacatcgttaagactatcttctccttcaatacttagttgtgatgcttcgtaaagagcaataagacctttgacatcctcgccatgtttt |
28586048 |
T |
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| Q |
110 |
tcttcaaacattcttttgttacacttcaagctgtcaaataaatctacgcaacaattatagttagtcactatattactaa |
188 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
28586049 |
tctttcaacattcttttgttccacttcaagctgtcaaataaatctacacaacaattatagttggtcactatattactaa |
28586127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 26315819 - 26315984
Alignment:
| Q |
25 |
atcgttaagacaatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatatttttcttcaaacattctt |
124 |
Q |
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||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||| |||| ||||||||| ||||||||| |
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| T |
26315819 |
atcgttaagactatcttctccttcaatacttagttgtgatgcttcgtaaagggcaacgagacctttcacatcctcgccatgtttttcttcgaacattctt |
26315918 |
T |
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| Q |
125 |
ttgttacacttcaagctgtcaaataaatctacgcaaca--attatagttagtcactatattactaa |
188 |
Q |
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|||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||||||| |
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| T |
26315919 |
ttgttacacttcaagctgtcaaataaatctgcaaaacaatattatagttagtcactatattactaa |
26315984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 10 - 188
Target Start/End: Original strand, 28579802 - 28579980
Alignment:
| Q |
10 |
gcagagatatcgtacatcgttaagacaatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatatttt |
109 |
Q |
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||||||||||| |||||||||||||| |||||||||||||||||||||||| |||||||||||||| | ||| |||||||| || || || |||| |||| |
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| T |
28579802 |
gcagagatatcctacatcgttaagactatcttctccttcaatacttagttgtgatgcttcgtaaagtgtaattagaccttttacttcttctccatgtttt |
28579901 |
T |
|
| Q |
110 |
tcttcaaacattcttttgttacacttcaagctgtcaaataaatctacgcaacaattatagttagtcactatattactaa |
188 |
Q |
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|||| |||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
28579902 |
tctttcaacattcttttgttccacttcaagctgtcaaataaatctacacaacaattatagttagtcactatattactaa |
28579980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 32 - 150
Target Start/End: Original strand, 20617136 - 20617254
Alignment:
| Q |
32 |
agacaatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatatttttct-tcaaacattcttttgtta |
130 |
Q |
| |
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|||| |||||||||||||||||||||||| |||||||| || | |||||||||||||||||||||||||||||||||| || |||| ||| ||||| || |
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| T |
20617136 |
agaccatcttctccttcaatacttagttgggatgcttcatacaaggcaatgagacctttcacatcctcaccatattttactctcaatgatt-ttttgcta |
20617234 |
T |
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| Q |
131 |
cacttcaagctgtcaaataa |
150 |
Q |
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|||||||||| ||||||||| |
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| T |
20617235 |
cacttcaagcagtcaaataa |
20617254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 192 - 246
Target Start/End: Original strand, 28580000 - 28580054
Alignment:
| Q |
192 |
tatatattcaaatgttgagaggatctgtattaaacaaacctgcatttacgtaatg |
246 |
Q |
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||||||||||||||| |||||| | ||||||||| ||||||||||||||||||| |
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| T |
28580000 |
tatatattcaaatgtggagagggtacgtattaaactaacctgcatttacgtaatg |
28580054 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 11 - 188
Target Start/End: Original strand, 24071371 - 24071548
Alignment:
| Q |
11 |
cagagatatcgtacatcgttaagacaatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatattttt |
110 |
Q |
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||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| |
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| T |
24071371 |
cagaggtatcctacatcgttaagatgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgtgttt |
24071470 |
T |
|
| Q |
111 |
cttcaaacattcttttgttacacttcaagctgtcaaataaatctacgcaacaattatagttagtcactatattactaa |
188 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
24071471 |
cttcaaacattcttttgttacacttcaagctgtcaaataaatctacacaacaattatagttagtcactacattactaa |
24071548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 11 - 156
Target Start/End: Complemental strand, 24079365 - 24079220
Alignment:
| Q |
11 |
cagagatatcgtacatcgttaagacaatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatattttt |
110 |
Q |
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||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
24079365 |
cagaggtatcctacatcgttaagatgatcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatgttttt |
24079266 |
T |
|
| Q |
111 |
cttcaaacattcttttgttacacttcaagctgtcaaataaatctac |
156 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24079265 |
cttcaaacattcttttgttacacttcaagctgtcaaataaatctac |
24079220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0870 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0870
Description:
Target: scaffold0870; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 208 - 246
Target Start/End: Complemental strand, 4969 - 4931
Alignment:
| Q |
208 |
gagaggatctgtattaaacaaacctgcatttacgtaatg |
246 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4969 |
gagaggatctgtattaaacaaacctgcatttacgtaatg |
4931 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 37 - 154
Target Start/End: Complemental strand, 2601542 - 2601425
Alignment:
| Q |
37 |
atcttctccttcaatacttagttgcgatgcttcgtaaagggcaatgagacctttcacatcctcaccatatttttcttcaaacattcttttgttacacttc |
136 |
Q |
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||||||||| ||||||||||| || || ||||| || | |||||||||| ||||||||||||||| ||||||| ||| |||| |||||| || || |
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| T |
2601542 |
atcttctccctcaatacttagctgggaggcttcatacatagcaatgagactcttcacatcctcaccaaatttttcactaaaatttctcttgttaaacatc |
2601443 |
T |
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| Q |
137 |
aagctgtcaaataaatct |
154 |
Q |
| |
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||||||||||||| |||| |
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|
| T |
2601442 |
aagctgtcaaatatatct |
2601425 |
T |
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Back To:
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