View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8444_low_8 (Length: 240)
Name: NF8444_low_8
Description: NF8444
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8444_low_8 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 7 - 240
Target Start/End: Complemental strand, 5318237 - 5318004
Alignment:
| Q |
7 |
tggacatcaacataaaggaaaagaaccaatggaccgcgaataatttgtacagctgcttagttccactctgattgtaaagtttcctggtgtcattatttgt |
106 |
Q |
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| T |
5318237 |
tggacatcaacataaaggaaaagaaccaatggaccgcgaataatttgtacagctgctttgttccactctgattgtaaagtttcctggtgtcattatttgt |
5318138 |
T |
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| Q |
107 |
catgtaaataagtaaatgaagatgtagatatcatatcctccactttgaccataattgagtgatggtgacctgtatcaagtttaattttatttcgctacac |
206 |
Q |
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| T |
5318137 |
catgtaaataagtaaatgaagatgtagatatcatatcctccactttgaccataattgagtgatggtgacctgtatcaagtttaattttatttcgctacac |
5318038 |
T |
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| Q |
207 |
agtggactaaaatttgcacattatttgatgattt |
240 |
Q |
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| T |
5318037 |
agtggactaaaatttgcacattatttgatgattt |
5318004 |
T |
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