View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8445_high_3 (Length: 402)
Name: NF8445_high_3
Description: NF8445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8445_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 37 - 385
Target Start/End: Complemental strand, 758673 - 758329
Alignment:
| Q |
37 |
tcacacctaccaagtaatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacatta |
136 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
758673 |
tcacacctaccaagtaatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacatta |
758574 |
T |
|
| Q |
137 |
agattctagcataaatacatgttggaatgattgattaatttaattaatttgattagcataactaagatctagcctccatgagtcatcataattaatatat |
236 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
758573 |
agattctagcataaatacatgttggaatgattgattaa-ttaattaatttgattagcataactaagatctagcctccatgagtcatcataattaatatat |
758475 |
T |
|
| Q |
237 |
taattattaacaacaaccttaatcattattacaatttgtgatatcattaccaataacatactacaacacatccccgtaatttaatttgttaaaaaaccaa |
336 |
Q |
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||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||| |
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| T |
758474 |
taattatcaacaacaaccttaatc---attacaatttgtgatatcattaccaataacatactacaacacatccccctaatttattttgttaagaaaccaa |
758378 |
T |
|
| Q |
337 |
agtgagaaacacaacatgatgataaatagaacagaatggaagaggacaa |
385 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
758377 |
agtgagaaacacaacatgatgataaatagaacagaatggaagaggacaa |
758329 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 39 - 385
Target Start/End: Original strand, 36988700 - 36989042
Alignment:
| Q |
39 |
acacctaccaagtaatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacattaag |
138 |
Q |
| |
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||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36988700 |
acacctaccaagtaatatatattttattttctttttaattcctcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacattaag |
36988799 |
T |
|
| Q |
139 |
attctagcataaatacatgttggaatgattgattaatttaattaatttgattagcataactaagatctagcctccatgagtcatcataattaatatatta |
238 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36988800 |
attctagcataaatacatgttggaataattgattaa-ttaattaatttgattagcataactaagatctagcctccatgagtcatcataattaatatatta |
36988898 |
T |
|
| Q |
239 |
attattaacaacaaccttaatcattattacaatttgtgatatcattaccaataacatactacaacacatccccgtaatttaatttgttaaaaaaccaaag |
338 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
36988899 |
attattaacaacaaccttaatc---attacaatttgtgatatcattaccaataacatactacaacacatccccgtaatttaatttgttaagaaaccaaag |
36988995 |
T |
|
| Q |
339 |
tgagaaacacaacatgatgataaatagaacagaatggaagaggacaa |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36988996 |
tgagaaacacaacatgatgataaatagaacagaatggaagaggacaa |
36989042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 39 - 385
Target Start/End: Original strand, 37014139 - 37014481
Alignment:
| Q |
39 |
acacctaccaagtaatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacattaag |
138 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37014139 |
acacctaccaagtaatatatattttattttctttttaattcctcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacattaag |
37014238 |
T |
|
| Q |
139 |
attctagcataaatacatgttggaatgattgattaatttaattaatttgattagcataactaagatctagcctccatgagtcatcataattaatatatta |
238 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37014239 |
attctagcataaatacatgttggaataattgattaa-ttaattaatttgattagcataactaagatctagcctccatgagtcatcataattaatatatta |
37014337 |
T |
|
| Q |
239 |
attattaacaacaaccttaatcattattacaatttgtgatatcattaccaataacatactacaacacatccccgtaatttaatttgttaaaaaaccaaag |
338 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
37014338 |
attattaacaacaaccttaatc---attacaatttgtgatatcattaccaataacatactacaacacatccccgtaatttaatttgttaagaaaccaaag |
37014434 |
T |
|
| Q |
339 |
tgagaaacacaacatgatgataaatagaacagaatggaagaggacaa |
385 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37014435 |
tgagaaacacaacatgatgataaatagaacagaatggaagaggacaa |
37014481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 235 - 323
Target Start/End: Complemental strand, 36443693 - 36443608
Alignment:
| Q |
235 |
attaattattaacaacaaccttaatcattattacaatttgtgatatcattaccaataacatactacaacacatccccgtaatttaattt |
323 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||||| | | ||||||| |||| ||||||||||| |
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|
| T |
36443693 |
attaattattaacaacaaccttagt---tattacaatttgtgatatcattaccaataatacattacaacatctcccgataatttaattt |
36443608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 51 - 121
Target Start/End: Complemental strand, 36443880 - 36443810
Alignment:
| Q |
51 |
taatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattc |
121 |
Q |
| |
|
||||||||||||||| |||||||| ||||| |||||||| ||| |||||||||||||||||| ||||||| |
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| T |
36443880 |
taatatatattttctcttctttttaattccctttgttgatttgtcttagtttatcacttcttacttcattc |
36443810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 40 - 156
Target Start/End: Complemental strand, 19181049 - 19180933
Alignment:
| Q |
40 |
cacctaccaagtaatatatattttcttttctttttgattcctcttgttgatctgttttagtttatcacttcttatttcattcttctcatgaacattaaga |
139 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||| |
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|
| T |
19181049 |
cacctaccaagtaatatatattttcttttctttttaattcctcttgttgatctgttttagattatcacttcttacttcattcttctcatgaacactaaga |
19180950 |
T |
|
| Q |
140 |
ttctagcataaatacat |
156 |
Q |
| |
|
|||||||||| |||||| |
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|
| T |
19180949 |
ttctagcatacatacat |
19180933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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