View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8445_low_10 (Length: 232)
Name: NF8445_low_10
Description: NF8445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8445_low_10 |
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Alignment Details
Target: chr1 (Bit Score: 50; Significance: 9e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 160 - 213
Target Start/End: Complemental strand, 52002609 - 52002556
Alignment:
| Q |
160 |
tcatcagcaatcgaactttgtttttcgtccttaaccaagtattataagcatatt |
213 |
Q |
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| T |
52002609 |
tcatcagcaattgaactttgtttttcgtccttaaccaagtattataagcatatt |
52002556 |
T |
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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 160 - 215
Target Start/End: Complemental strand, 5174806 - 5174751
Alignment:
| Q |
160 |
tcatcagcaatcgaactttgtttttcgtccttaaccaagtattataagcatattcc |
215 |
Q |
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| T |
5174806 |
tcatcagcaattgaagtttgtttttcatccttaaccaaatataataagcatattcc |
5174751 |
T |
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