View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8445_low_2 (Length: 482)
Name: NF8445_low_2
Description: NF8445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8445_low_2 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 17 - 482
Target Start/End: Complemental strand, 39026938 - 39026475
Alignment:
| Q |
17 |
agcatcttagaggcaaacatggttctgataaaacaacaattcttagtagatggcttgttaagagaatgagaaaagatggtctcattgcttctctgtatca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39026938 |
agcatcttagaggcaaacatggttctgataaaacaacaattcttagtagatggcttgttaagagaatgagaaaagatggtctcattgcttctctgtatca |
39026839 |
T |
|
| Q |
117 |
aacatcttggtctacctccttaggatgtcctgctggtgagtcttactatacnnnnnnnnaccattaataatattatcttactatacttttttaccactaa |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39026838 |
aacatcttggtctacctccttaggatgtcctgctggtgagtcttactatactttttt--accattaataatattatcttactatacttttttaccactaa |
39026741 |
T |
|
| Q |
217 |
acatgttgtttatataacaggtgaatacgaatatattgaagtcataattgaagatgagaacaatattgatgatcctatgaggcttatagtagatatagac |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39026740 |
acatgttgtttatataacaggtgaatacgaatatattgaagtcataattgaagatgagaacaatattgatgatcctatgaggcttatagtagatatagac |
39026641 |
T |
|
| Q |
317 |
tttaagtcccaatttgaacttgcaaggccaacacaatactacaaagaattaatagactcattaccattaatctttattgggagagagaacaaattatgca |
416 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39026640 |
tttaagtcccaatttgaacttgcaaggccaacacaatactacaaagaattaatagactcattaccattaatctttgttgggagagagaacaaattatgca |
39026541 |
T |
|
| Q |
417 |
agataatttctttgctatgttcagctgccaaacagtccctaagagaaaagggtttacatgtaccac |
482 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39026540 |
agataatttctttgctatgttcagctgccaaacagtccctaagagaaaagggtttacatgtaccac |
39026475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University