View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8445_low_9 (Length: 251)
Name: NF8445_low_9
Description: NF8445
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8445_low_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 31839906 - 31839685
Alignment:
| Q |
19 |
aacaaagagatatattattatataaaaggtagaaagacacaaaaagctgcaaattatgatcatgatatctacaccttcagaacaatatctcacagaagcc |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
31839906 |
aacaaagagatatattattatataaaaggtagaaagaaacaaaaagctgcaaattatgatcatgatatctacaccttcagaacaatatctcacaggagcc |
31839807 |
T |
|
| Q |
119 |
aaacagagatttcatttcattaaaagcattacatgattttggcactccagtttgatggcatcctgtactctttgtatagcaacacaaacatggatatggt |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31839806 |
aaacagagatttcatttcattaaaagcattacatgattttggcactccagtttgatggcatcctgtactctttgtatagcaacacaaacatggatatggc |
31839707 |
T |
|
| Q |
219 |
cccattgacgacgacatttcat |
240 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
31839706 |
cccattgacgacgacatttcat |
31839685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University