View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8446_low_2 (Length: 395)
Name: NF8446_low_2
Description: NF8446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8446_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 388
Target Start/End: Complemental strand, 16020727 - 16020360
Alignment:
| Q |
18 |
attcctattggaatgaaatggttctcaatttcatgaaggaaactttgatacctattttttagttttattatattattctcactttgttttgttctaaaag |
117 |
Q |
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| T |
16020727 |
attcctattggaatgaaatggttctcaatttcatgaaggaaactttgatacctattttttagttttattatattattctcactttgttttgttctaaaag |
16020628 |
T |
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| Q |
118 |
ttggtactaacttttctcnnnnnnngtctaatccaatttgcacataatttggtaatagaattacataaggaccattgctttgatttctaatttggaacat |
217 |
Q |
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| T |
16020627 |
ttggtactaacttttttctttttttgtctaatccaatttgcacataatttggtaatagaattacataaggaccattgctttgatttctaatttggaacat |
16020528 |
T |
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| Q |
218 |
aatccacataaaatctgtttgatttgacttatttgagttaatttatacactaatacaaaaatttgtgatatactttttgaaagagctaatcaaaatagtt |
317 |
Q |
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||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16020527 |
aatccacataaaatctgtttgatttgacttatttg----attttatacactaatacaaaaatttgtgatatactttttgaaagagctaatcaaaatagtt |
16020432 |
T |
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| Q |
318 |
tataacat-tttataagttgtttttatctctataaattttctcgaatactttataaaaacaagttcatttca |
388 |
Q |
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||| |||| || ||||||||||||||| |||||||||| ||||||||| ||||||||||||||||| ||||| |
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| T |
16020431 |
tatgacatcttcataagttgtttttatgtctataaattctctcgaatattttataaaaacaagttcttttca |
16020360 |
T |
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