View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8446_low_3 (Length: 282)
Name: NF8446_low_3
Description: NF8446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8446_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 268
Target Start/End: Complemental strand, 31718181 - 31717908
Alignment:
| Q |
1 |
ttataataaacaccattgagttagtatcagaccttgga-tcacctctcaaactaagaacttcttttcccccaagcttcttcatcttgcaatgacctttta |
99 |
Q |
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| T |
31718181 |
ttataataaacaccattgagttagtatcagaccttggaatcacctctcaaactaaaaacttcttttcccccaagtttcttcatcttgcaatgacctttta |
31718082 |
T |
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| Q |
100 |
gata-agatgcttctagaaaggaaaaccttgtatatatttagattaatgatacctactacaatatatttgaagattcaagttggaaaagaagcaaaagct |
198 |
Q |
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| T |
31718081 |
gatacagatgcttctagaaaggaaaaccttgtatatatttagattaatgatacctactacaatatatttgaatattcaagttggaaaagaagcaaaagct |
31717982 |
T |
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| Q |
199 |
tgaca----gaattatatttctttccctttctgtcgcacaaagcaacaaaccaaaattcttgtctcatctgatg |
268 |
Q |
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| T |
31717981 |
tgacataattaattatatttctttccctttctgtcgcacaaagcaacaaaccaaaatccttgtctcatctgatg |
31717908 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 155 - 251
Target Start/End: Complemental strand, 31654479 - 31654383
Alignment:
| Q |
155 |
ctacaatatatttgaagattcaagttggaaaagaagcaaaagcttgacagaattatatttctttccctttctgtcgcacaaagcaacaaaccaaaat |
251 |
Q |
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| T |
31654479 |
ctacaatatatttaaagtttcaaggtggaatccaagtaaaagcttgacagagttatatttctttccctttctgtcacacaaagcaacagaccgaaat |
31654383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 192 - 251
Target Start/End: Complemental strand, 31704810 - 31704751
Alignment:
| Q |
192 |
aaaagcttgacagaattatatttctttccctttctgtcgcacaaagcaacaaaccaaaat |
251 |
Q |
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| T |
31704810 |
aaaagcttgacagagttatatttctttccctttctgtcacacaaagcaacagaccgaaat |
31704751 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 251
Target Start/End: Original strand, 44901188 - 44901284
Alignment:
| Q |
155 |
ctacaatatatttgaagattcaagttggaaaagaagcaaaagcttgacagaattatatttctttccctttctgtcgcacaaagcaacaaaccaaaat |
251 |
Q |
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| T |
44901188 |
ctacaatatatttgtagtttcaacgtgaaagcgaagtaaaagcttaacagagttaaatttcttcccctttcagtcacacaaacgaacaaaccgaaat |
44901284 |
T |
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