View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8446_low_5 (Length: 238)
Name: NF8446_low_5
Description: NF8446
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8446_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 55986725 - 55986503
Alignment:
| Q |
1 |
ataaattgagattgcttagggattagggatggacctttttattccttcttgcgtttgttgattctatggtgctccagagcatgtgattttctgtctggta |
100 |
Q |
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| T |
55986725 |
ataaattgagattgcttagggattagagatggacctttttattccttcttgcgtttgttgattctatggtgctccagagaatgtgattttctgtctggta |
55986626 |
T |
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| Q |
101 |
tcactggaattactgaatgcctcaacgcaagtcgcaagacggcaattagtttgtgtt-ttttattgttttgatttgctagttgtaattaattatgaagca |
199 |
Q |
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| T |
55986625 |
tcactggaattactgaatgcctcaacgcaagtcgcaagacggcaattagtttgtgtttttttattgttttgatttgctagttgtaattaattatgaagca |
55986526 |
T |
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| Q |
200 |
ttcaagtatttctgacctcagaaa |
223 |
Q |
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| T |
55986525 |
-tcaagtatttctgacctcagaaa |
55986503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 200
Target Start/End: Original strand, 33552124 - 33552167
Alignment:
| Q |
156 |
ttttttattgttttgatttgctagttgtaattaattatgaagcat |
200 |
Q |
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| T |
33552124 |
ttttttattgttttgatttgctagttgt-attaattatgaagcat |
33552167 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 106
Target Start/End: Original strand, 31782213 - 31782281
Alignment:
| Q |
38 |
tttattccttcttgcgtttgttgattctatggtgctccagagcatgtgattttctgtctggtatcactg |
106 |
Q |
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| T |
31782213 |
tttattcttgcttgtgtttgttgattctatggtgctctagcgcatgcgattttgtgtttgatatcactg |
31782281 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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