View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8447_high_4 (Length: 239)
Name: NF8447_high_4
Description: NF8447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8447_high_4 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] chr5 (4 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 2 - 239
Target Start/End: Complemental strand, 22750590 - 22750353
Alignment:
| Q |
2 |
attttaaaagtgtgtggtacaaaggcttatgtagcacagtcaccatggatacaaagtagcaagatagaaaataacatattgtttgggaaggatatggaaa |
101 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22750590 |
attttaaaagtgtgtggtacaaaggcttatgtagcacagtcgccatggatacaaagtagcaagatagaaaataacatattgtttgggaaggatatggaaa |
22750491 |
T |
|
| Q |
102 |
ggcaaagatatgagaaggttcttgaagcatgttcactaaagaaggatctcgagattttatcatttggcgatcaaacaattataggggagaggggaataaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22750490 |
ggcaaagatatgagaaggttcttgaagcatgttcactaaagaaggatctcgagattttatcatttggcgatcaaacaattataggggagaggggaataaa |
22750391 |
T |
|
| Q |
202 |
tttgagcggcggacagaaacaaagagtacaaattgctc |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22750390 |
tttgagcggcggacagaaacaaagagtacaaattgctc |
22750353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 22739718 - 22739949
Alignment:
| Q |
8 |
aaagtgtgtggtacaaaggcttatgtagcacagtcaccatggatacaaagtagcaagatagaaaataacatattgtttgggaaggatatgga-aaggcaa |
106 |
Q |
| |
|
||||||||||| |||||||||||||| || || || ||||||||||| ||| ||||||||||| | || ||| | ||||| | || ||||| |||| || |
|
|
| T |
22739718 |
aaagtgtgtggaacaaaggcttatgttgctcaatcgccatggatacagagtggcaagatagaagagaatatactatttggtagagagatggataaggaaa |
22739817 |
T |
|
| Q |
107 |
agatatgagaaggttcttgaagcatgttcactaaagaaggatctcgagattttatcatttggcgatcaaacaattataggggagaggggaataaatttga |
206 |
Q |
| |
|
|| |||||||||||||| |||||||||||| | ||||| || |||||| ||||| ||||| | |||||||| ||||| || |||| ||||| ||||||| |
|
|
| T |
22739818 |
ag-tatgagaaggttctagaagcatgttcattgaagaaagacctcgaggttttaccatttcgtgatcaaaccattattggagagaaaggaatcaatttga |
22739916 |
T |
|
| Q |
207 |
gcggcggacagaaacaaagagtacaaattgctc |
239 |
Q |
| |
|
| || |||||||||||||||||||||||||||| |
|
|
| T |
22739917 |
gtggtggacagaaacaaagagtacaaattgctc |
22739949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 22727259 - 22727034
Alignment:
| Q |
14 |
tgtggtacaaaggcttatgtagcacagtcaccatggatacaaagtagcaagatagaaaataacatattgtttgggaaggatatggaaaggcaaagatatg |
113 |
Q |
| |
|
||||| |||||||||||||| || || ||||| |||||||| ||| ||||||||||| |||| ||| | ||||| | || ||||| ||| ||| ||| |
|
|
| T |
22727259 |
tgtggaacaaaggcttatgttgctcaatcaccgtggatacagagtggcaagatagaagataatatactatttggtagagagatggatagggaaaagtatt |
22727160 |
T |
|
| Q |
114 |
agaaggttcttgaagcatgttcactaaagaaggatctcgagattttatcatttggcgatcaaacaattataggggagaggggaataaatttgagcggcgg |
213 |
Q |
| |
|
|||||||||| |||||||||||| | ||||| || |||||| ||||| ||||||| ||||| || ||||| || |||| |||||| |||||||| || || |
|
|
| T |
22727159 |
agaaggttctagaagcatgttcattgaagaaagacctcgaggttttaccatttggtgatcagaccattattggagagaagggaatcaatttgagtggtgg |
22727060 |
T |
|
| Q |
214 |
acagaaacaaagagtacaaattgctc |
239 |
Q |
| |
|
|||||| |||||||||||||| |||| |
|
|
| T |
22727059 |
acagaagcaaagagtacaaatcgctc |
22727034 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 114 - 239
Target Start/End: Original strand, 22740667 - 22740792
Alignment:
| Q |
114 |
agaaggttcttgaagcatgttcactaaagaaggatctcgagattttatcatttggcgatcaaacaattataggggagaggggaataaatttgagcggcgg |
213 |
Q |
| |
|
|||||||||| |||||||||||| | ||||| || |||||| ||||| ||||||| ||||| || ||||| || |||| |||||| |||||||| || || |
|
|
| T |
22740667 |
agaaggttctagaagcatgttcattgaagaaagacctcgaggttttaccatttggtgatcagaccattattggagagaagggaatcaatttgagtggtgg |
22740766 |
T |
|
| Q |
214 |
acagaaacaaagagtacaaattgctc |
239 |
Q |
| |
|
|||||| |||||| ||||||| |||| |
|
|
| T |
22740767 |
acagaagcaaagactacaaatcgctc |
22740792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 72; Significance: 7e-33; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 8 - 239
Target Start/End: Original strand, 14372491 - 14372722
Alignment:
| Q |
8 |
aaagtgtgtggtacaaaggcttatgtagcacagtcaccatggatacaaagtagcaagatagaaaataacatattgtttgggaaggatatggaaaggcaaa |
107 |
Q |
| |
|
||||| ||||| |||||||| ||||| || || ||||||||||| |||||| ||| |||||| |||| ||||||||||| | | |||| | | ||| |
|
|
| T |
14372491 |
aaagtttgtggaacaaaggcctatgttgctcaatcaccatggattcaaagtggcacgatagaggataatatattgtttggtgaacacatggttaaggaaa |
14372590 |
T |
|
| Q |
108 |
gatatgagaaggttcttgaagcatgttcactaaagaaggatctcgagattttatcatttggcgatcaaacaattataggggagaggggaataaatttgag |
207 |
Q |
| |
|
| ||||||| ||| |||||||||||||| || ||||||||||| || || || |||||||| ||||| ||| ||||||| ||| | |||||||||||||| |
|
|
| T |
14372591 |
ggtatgagatggtacttgaagcatgttccctgaagaaggatctggaaatattgtcatttggtgatcagacagttataggcgagcgtggaataaatttgag |
14372690 |
T |
|
| Q |
208 |
cggcggacagaaacaaagagtacaaattgctc |
239 |
Q |
| |
|
|| ||||||||||| ||| |||||||||||| |
|
|
| T |
14372691 |
tggtggacagaaacagagaatacaaattgctc |
14372722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 41451870 - 41451645
Alignment:
| Q |
14 |
tgtggtacaaaggcttatgtagcacagtcaccatggatacaaagtagcaagatagaaaataacatattgtttgggaaggatatggaaaggcaaagatatg |
113 |
Q |
| |
|
||||| |||||||| ||||| || || ||||||||||| |||||| |||||||||| |||| ||||||||||| | | |||| ||| |||| |||| |
|
|
| T |
41451870 |
tgtggaacaaaggcctatgtcgctcaatcaccatggattcaaagtggcaagatagaggataatatattgtttggtgaaaacatggttagggaaaggtatg |
41451771 |
T |
|
| Q |
114 |
agaaggttcttgaagcatgttcactaaagaaggatctcgagattttatcatttggcgatcaaacaattataggggagaggggaataaatttgagcggcgg |
213 |
Q |
| |
|
| ||||| |||||||||||||| | ||||||||| | || || || |||||||| ||||| ||| ||||||| ||| | |||||||||||||| || || |
|
|
| T |
41451770 |
aaaaggtacttgaagcatgttccttgaagaaggatttggaaatcttgtcatttggtgatcagacagttataggcgagcgtggaataaatttgagtggtgg |
41451671 |
T |
|
| Q |
214 |
acagaaacaaagagtacaaattgctc |
239 |
Q |
| |
|
||||||||||||| ||||||| |||| |
|
|
| T |
41451670 |
acagaaacaaagaatacaaatagctc |
41451645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 41 - 237
Target Start/End: Complemental strand, 14240834 - 14240638
Alignment:
| Q |
41 |
tcaccatggatacaaagtagcaagatagaaaataacatattgtttgggaaggatatggaaaggcaaagatatgagaaggttcttgaagcatgttcactaa |
140 |
Q |
| |
|
||||||||||| |||||| |||||||||| |||| ||||||||||| || | |||| ||| |||| ||||| ||||| || ||||| || | ||| |
|
|
| T |
14240834 |
tcaccatggattcaaagtggcaagatagaggataatatattgtttggcaaacaaatggttagggaaaggtatgaaaaggtactcgaagcttgctacttaa |
14240735 |
T |
|
| Q |
141 |
agaaggatctcgagattttatcatttggcgatcaaacaattataggggagaggggaataaatttgagcggcggacagaaacaaagagtacaaattgc |
237 |
Q |
| |
|
|||||||||| || || || |||||||| |||||||| ||||||| ||| | |||||||||||||| || ||||||||||||||| |||||||||| |
|
|
| T |
14240734 |
agaaggatctggaaatcttgtcatttggtgatcaaacggttataggcgagcgcggaataaatttgagtggtggacagaaacaaagaatacaaattgc |
14240638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 239
Target Start/End: Complemental strand, 41438693 - 41438476
Alignment:
| Q |
22 |
aaaggcttatgtagcacagtcaccatggatacaaagtagcaagatagaaaataacatattgtttgggaaggatatggaaaggcaaagatatgagaaggtt |
121 |
Q |
| |
|
|||||| ||||| || || | ||||||||| |||||| |||||||||| |||| ||||| ||||| | | |||| ||| |||| ||||| ||||| |
|
|
| T |
41438693 |
aaaggcctatgttgctcaattaccatggattcaaagtggcaagatagaggataatatattatttggtgaaaacatggttagggaaaggtatgaaaaggta |
41438594 |
T |
|
| Q |
122 |
cttgaagcatgttcactaaagaaggatctcgagattttatcatttggcgatcaaacaattataggggagaggggaataaatttgagcggcggacagaaac |
221 |
Q |
| |
|
|||||||||||| | | ||||||||| | || || || |||||||| ||||| ||| ||||||| ||| | |||||||||||||| || |||||||||| |
|
|
| T |
41438593 |
cttgaagcatgtaccttgaagaaggatttagaaatcttgtcatttggtgatcagacagttataggcgagcgtggaataaatttgagtggtggacagaaac |
41438494 |
T |
|
| Q |
222 |
aaagagtacaaattgctc |
239 |
Q |
| |
|
||||| ||||||| |||| |
|
|
| T |
41438493 |
aaagaatacaaatagctc |
41438476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University