View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8447_high_5 (Length: 231)
Name: NF8447_high_5
Description: NF8447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8447_high_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 27 - 216
Target Start/End: Complemental strand, 19395631 - 19395443
Alignment:
| Q |
27 |
caaagtcatcaatgtcaacatgtcctcatgtttgtctcaaaggttaaaattacatgagtgatgctttgctacttatgcgatgccttattttttacatttc |
126 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
19395631 |
caaagtcatcaatgtcaacatgtcctcatgtttgtctcaa-ggttaaaattacatgagtgatgttttgctacttatgcgatgccttattttttacatttc |
19395533 |
T |
|
| Q |
127 |
aatgctgtcttaaattcatcaatttgttccagtctcattttcttttttgaaaagtgaatcacannnnnnnatattataaagtaatggtgg |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19395532 |
aatgctgtcttaaattcatcaatttgttccagtctcattttcttttttgaaaagtgaatcacatttttttatattataaagtaatggtgg |
19395443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 19383299 - 19383220
Alignment:
| Q |
1 |
ccataactcaactcaaactatcatttcaaagtcatcaatgtcaacatgtcctcatgtttgtctcaaaggttaaaattacatg |
82 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
19383299 |
ccataacacaactcaaactatcatttcaaagtcatcaatgtcaacatgtcctcatgtttgtctc--aggttaaaattacatg |
19383220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 118 - 185
Target Start/End: Original strand, 18871595 - 18871661
Alignment:
| Q |
118 |
ttacatttcaatgctgtcttaaattcatcaatttgttccagtctcattttcttttttgaaaagtgaat |
185 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
18871595 |
ttacatttcaatgctgtcttaaatccatcaatttgttccaatctcattttc-tttctgaaaagtgaat |
18871661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 52 - 81
Target Start/End: Original strand, 18871571 - 18871600
Alignment:
| Q |
52 |
tcatgtttgtctcaaaggttaaaattacat |
81 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
18871571 |
tcatgtttgtctcaaaggttaaaattacat |
18871600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University