View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8447_high_6 (Length: 223)
Name: NF8447_high_6
Description: NF8447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8447_high_6 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 106; Significance: 3e-53; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 106; E-Value: 3e-53
Query Start/End: Original strand, 110 - 223
Target Start/End: Complemental strand, 19396041 - 19395928
Alignment:
| Q |
110 |
ttgactcctagttagagcactccgctatgcctgtttgtttatgcaacgtgaaaggtttgaatgaattttatttaattttgtacatgaaaaattatactca |
209 |
Q |
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| T |
19396041 |
ttgactcctagttagagcactccgctatgcctgtttgtttatgcaaagtgaaaggtttgaatgaattttatttaattttgtaaatgaaaaattatactca |
19395942 |
T |
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| Q |
210 |
aaagactagagttg |
223 |
Q |
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| T |
19395941 |
aaagactagagttg |
19395928 |
T |
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Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 19396616 - 19396537
Alignment:
| Q |
1 |
gaacccattgaagagccgagagcacacctaacacttccccccaagtctacatctaccaaaggtgaaatccattccgatct |
80 |
Q |
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| T |
19396616 |
gaacccattgaagagccgagagcacacctaacacttccccccaagtctacatctaccaaaggtgaaatccattccgatct |
19396537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 155 - 223
Target Start/End: Complemental strand, 18167438 - 18167370
Alignment:
| Q |
155 |
acgtgaaaggtttgaatgaattttatttaattttgtacatgaaaaattatactcaaaagactagagttg |
223 |
Q |
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| T |
18167438 |
acgtgaaaggtttgaatgaattttatttaattttgtacatgaaaaattatactcaaaagactagagttg |
18167370 |
T |
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