View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8447_low_10 (Length: 210)
Name: NF8447_low_10
Description: NF8447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8447_low_10 |
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| [»] scaffold0008 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 168; Significance: 3e-90; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 15 - 193
Target Start/End: Complemental strand, 6152380 - 6152201
Alignment:
| Q |
15 |
atgaaaataaagcacatctttaaccgtgaattcatttatactaat-tcaaccaaagttaatattaacaagtaattaagaaagtatatatacctcaatcct |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6152380 |
atgaaaataaagcacatctttaaccgtgaattcatttatactaatatcaaccaaagttaatattaacaagtaattaagaaagtatatatacctcaatcct |
6152281 |
T |
|
| Q |
114 |
gagcctgttcctctctggcctaagttcatgagaagttgaaatgaaattgtggtgaatgccaccatggctagctacattct |
193 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
6152280 |
gagcctgttcctctctggcctaagttcatgagaagttgaaatgaaattgtggtgaatgccaccatggctagttacattct |
6152201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 16 - 193
Target Start/End: Complemental strand, 6146193 - 6146015
Alignment:
| Q |
16 |
tgaaaataaagcacatctttaaccgtgaattcatttatactaat-tcaaccaaagttaatattaacaagtaattaagaaagtatatatacctcaatcctg |
114 |
Q |
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||||||| |||||||||||||| | ||||||||||||||||||| ||||||||||| ||||||| ||||||| | ||||||||||| |||||||| |||| |
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| T |
6146193 |
tgaaaatgaagcacatctttaaacatgaattcatttatactaatatcaaccaaagtcaatattatcaagtaacttagaaagtatatgtacctcaaccctg |
6146094 |
T |
|
| Q |
115 |
agcctgttcctctctggcctaagttcatgagaagttgaaatgaaattgtggtgaatgccaccatggctagctacattct |
193 |
Q |
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| T |
6146093 |
tgcctgttcctctctggcctaagttcatgagaagttgaaattaaattgtggtgaatgccaccatggctagctacattct |
6146015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 115; E-Value: 1e-58
Query Start/End: Original strand, 24 - 193
Target Start/End: Complemental strand, 6126769 - 6126599
Alignment:
| Q |
24 |
aagcacatctttaaccgtgaattcatttatactaattc-aaccaaagttaatattaacaagtaattaagaaagtatatatacctcaatcctgagcctgtt |
122 |
Q |
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|||||||||||||||| ||||||||||||||||||| | || |||||||||||||| ||||||| |||||||||||||||||||||| | ||||| |||| |
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| T |
6126769 |
aagcacatctttaaccatgaattcatttatactaataccaaacaaagttaatattatcaagtaactaagaaagtatatatacctcaaccatgagcatgtt |
6126670 |
T |
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| Q |
123 |
cctctctggcctaagttcatgagaagttgaaatgaaattgtggtgaatgccaccatggctagctacattct |
193 |
Q |
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||||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
6126669 |
cctctctagcctaagttcatgagaagttgaaatgaaattgccgtaaatgccaccatggctagctacattct |
6126599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 34283975 - 34283823
Alignment:
| Q |
16 |
tgaaaataaagcacatctttaaccgtgaattcatttatactaat--tcaaccaaagttaatattaacaagtaattaagaaagtatatatacctcaatcct |
113 |
Q |
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||||||| |||||||| ||||| |||||||||||||| ||||| ||||||||| |||||||||| ||||||||||||||| ||||||||||||| ||| |
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| T |
34283975 |
tgaaaatgaagcacattattaacggtgaattcatttattctaatcttcaaccaaatttaatattaataagtaattaagaaagcatatatacctcaaccct |
34283876 |
T |
|
| Q |
114 |
gagcctgttcctctctggcctaagttcatgagaagttgaaatgaaattgtggt |
166 |
Q |
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| T |
34283875 |
gagcatttccctctctatcgaaagttcatgagaatttgaaatgaaattgtggt |
34283823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 16 - 175
Target Start/End: Original strand, 34282628 - 34282789
Alignment:
| Q |
16 |
tgaaaataaagcacatctttaaccgtgaattcatttatactaat--tcaaccaaagttaatattaacaagtaattaagaaagtatatatacctcaatcct |
113 |
Q |
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||||||| ||||||| ||||| |||||||||||||| ||||| |||||||| ||||||||||||||||||||||||||| || |||||| ||| ||| |
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| T |
34282628 |
tgaaaatggagcacattattaacggtgaattcatttattctaatattcaaccaatgttaatattaacaagtaattaagaaagaatttataccccaaccct |
34282727 |
T |
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| Q |
114 |
gagcctgttcctctctggcctaagttcatgagaagttgaaatgaaattgtggtgaatgccac |
175 |
Q |
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||||| ||||||| | || ||||||||||||||||||||||||||||| | |||||| |
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| T |
34282728 |
gagccatgccctctctatcaaaatttcatgagaagttgaaatgaaattgtggtaagtgccac |
34282789 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 6139437 - 6139357
Alignment:
| Q |
79 |
acaagtaattaagaaagtatatatacctcaatcctgagcctgttcctctctggcctaagttcatgagaagttgaaatgaaa |
159 |
Q |
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|||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||| |||||||||||||||| |
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| T |
6139437 |
acaagtaattaagaaagtatatatacctcatccctgagagcgttcctctcttccctaagttcattagaagttgaaatgaaa |
6139357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 33802369 - 33802413
Alignment:
| Q |
59 |
ttcaaccaaagttaatattaacaagtaattaagaaagtatatata |
103 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33802369 |
ttcaaccaaagttaatattaacaagtaattaagaaagtatatata |
33802413 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 59 - 103
Target Start/End: Original strand, 33731025 - 33731068
Alignment:
| Q |
59 |
ttcaaccaaagttaatattaacaagtaattaagaaagtatatata |
103 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
33731025 |
ttcaaccaaagttaatatta-caagtaattaagaaagtatatata |
33731068 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 159
Target Start/End: Original strand, 7802 - 7917
Alignment:
| Q |
43 |
aattcatttatactaatt--caaccaaagttaatattaacaagtaattaagaaagtatatatacctcaatcctgagcctgttcctctctggcctaagttc |
140 |
Q |
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||||||||||||||||| |||||||| |||| | |||||||||||||||||||||||||||||| |||||| ||||||| || ||||||||| |
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| T |
7802 |
aattcatttatactaatgaacaaccaaa---aataatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctcccttccctaagttc |
7898 |
T |
|
| Q |
141 |
atgagaagttgaaatgaaa |
159 |
Q |
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|| |||||||||||||||| |
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| T |
7899 |
atcagaagttgaaatgaaa |
7917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 43 - 159
Target Start/End: Original strand, 18383 - 18498
Alignment:
| Q |
43 |
aattcatttatactaatt--caaccaaagttaatattaacaagtaattaagaaagtatatatacctcaatcctgagcctgttcctctctggcctaagttc |
140 |
Q |
| |
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||||||||||||||||| |||||||| |||| | |||||||||||||||||||||||||||||| |||||| ||||||| || ||||||||| |
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| T |
18383 |
aattcatttatactaatgaacaaccaaa---aataatcacaagtaattaagaaagtatatatacctcatccctgagagcgttcctcccttccctaagttc |
18479 |
T |
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| Q |
141 |
atgagaagttgaaatgaaa |
159 |
Q |
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|| |||||||||||||||| |
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| T |
18480 |
atcagaagttgaaatgaaa |
18498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 79 - 159
Target Start/End: Complemental strand, 25364234 - 25364154
Alignment:
| Q |
79 |
acaagtaattaagaaagtatatatacctcaatcctgagcctgttcctctctggcctaagttcatgagaagttgaaatgaaa |
159 |
Q |
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||||||||||||||||| |||||||||||| | |||| |||||||||| ||||||||||| |||||||||||||||| |
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| T |
25364234 |
acaagtaattaagaaagcatatatacctcatccatgagagcgttcctctcttccctaagttcatcagaagttgaaatgaaa |
25364154 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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