View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8447_low_2 (Length: 422)

Name: NF8447_low_2
Description: NF8447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8447_low_2
NF8447_low_2
[»] chr4 (1 HSPs)
chr4 (56-403)||(49216683-49217017)
[»] chr3 (6 HSPs)
chr3 (1-64)||(11347259-11347322)
chr3 (1-55)||(19650911-19650965)
chr3 (24-57)||(22426378-22426411)
chr3 (24-56)||(24343546-24343578)
chr3 (24-56)||(33839530-33839562)
chr3 (1-58)||(42297350-42297407)
[»] chr5 (2 HSPs)
chr5 (24-57)||(13664640-13664673)
chr5 (24-60)||(3362773-3362809)
[»] chr2 (1 HSPs)
chr2 (1-59)||(35160753-35160811)
[»] chr8 (1 HSPs)
chr8 (24-56)||(26042150-26042182)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 56 - 403
Target Start/End: Original strand, 49216683 - 49217017
Alignment:
Q  56 tatatgaaattgagaaatgattggggaacacaaaaattgacattggacaccgtattcctatacggttgagatacaatttggagttttgaatattttaagg 155  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               
T  49216683 tatatgaaattgagaaatgattggggaacacaaaaattgacattggacaccgtattcctatacggttgagatacaatttggagttttga----------- 49216771  T
Q  156 taggattcgttttccgtgtacatatgttatacggtgtgtatacattgttaatactgtttgtttgtgttctaatatcatcatttctaaagtggagttacat 255  Q
      |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  49216772 --ggattcgttttcagtgtacatatgttatacggtgtgtatacattgttaatactgtttgtttgtgttctaatataatcatttctaaagtggagttacat 49216869  T
Q  256 agtataaagaaggcatgattatgccttattgattgattgctttacaatcttctccgatgaggatagaaaacgttgaagtattaaggacagctacnnnnnn 355  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||          
T  49216870 agtataaagaaggcatgattatgccgtattgattgattgctttacaatcttctccgatgaggatagaaaaagttgaagtattaaggacagctacaaaaaa 49216969  T
Q  356 ncaaggttggtaagataattgagcttaaactgacccaagacatagtgc 403  Q
     ||||||||||||||||||||| |||||||||||||||||||||||||    
T  49216970 acaaggttggtaagataattgaccttaaactgacccaagacatagtgc 49217017  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 64
Target Start/End: Complemental strand, 11347322 - 11347259
Alignment:
Q  1 catgtcattcttaaaannnnnnngataaaatctttcttaatatataccattgctctatatgaaa 64  Q
    ||||||||||||||||       ||||||||||||||| ||||||| ||||||||| |||||||    
T  11347322 catgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctttatgaaa 11347259  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 19650911 - 19650965
Alignment:
Q  1 catgtcattcttaaaannnnnnngataaaatctttcttaatatataccattgctc 55  Q
    ||||||||||||||||       ||||||||||||||||||||||| ||||||||    
T  19650911 catgtcattcttaaaattttcttgataaaatctttcttaatatataacattgctc 19650965  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Original strand, 22426378 - 22426411
Alignment:
Q  24 gataaaatctttcttaatatataccattgctcta 57  Q
    ||||||||||||||||||||||| ||||||||||    
T  22426378 gataaaatctttcttaatatataacattgctcta 22426411  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 24343578 - 24343546
Alignment:
Q  24 gataaaatctttcttaatatataccattgctct 56  Q
    ||||||||||||||||||||||| |||||||||    
T  24343578 gataaaatctttcttaatatatagcattgctct 24343546  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 56
Target Start/End: Complemental strand, 33839562 - 33839530
Alignment:
Q  24 gataaaatctttcttaatatataccattgctct 56  Q
    ||||||||||||||||||||||| |||||||||    
T  33839562 gataaaatctttcttaatatataacattgctct 33839530  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 42297407 - 42297350
Alignment:
Q  1 catgtcattcttaaaannnnnnngataaaatctttcttaatatataccattgctctat 58  Q
    ||||||||||||||||       ||||||||||||||| ||||||| |||||||||||    
T  42297407 catgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctat 42297350  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 57
Target Start/End: Complemental strand, 13664673 - 13664640
Alignment:
Q  24 gataaaatctttcttaatatataccattgctcta 57  Q
    ||||||||||||||||||||||| ||||||||||    
T  13664673 gataaaatctttcttaatatataacattgctcta 13664640  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 3362809 - 3362773
Alignment:
Q  24 gataaaatctttcttaatatataccattgctctatat 60  Q
    ||||||||||||||| ||||||| |||||||||||||    
T  3362809 gataaaatctttcttgatatatagcattgctctatat 3362773  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 35160811 - 35160753
Alignment:
Q  1 catgtcattcttaaaannnnnnngataaaatctttcttaatatataccattgctctata 59  Q
    ||||||||||||||||       ||||||||||||||| ||||||| ||||||||||||    
T  35160811 catgtcattcttaaaattttcttgataaaatctttcttgatatatagcattgctctata 35160753  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 56
Target Start/End: Original strand, 26042150 - 26042182
Alignment:
Q  24 gataaaatctttcttaatatataccattgctct 56  Q
    ||||||||||||||||||||||| |||||||||    
T  26042150 gataaaatctttcttaatatatagcattgctct 26042182  T

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