View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8447_low_3 (Length: 385)
Name: NF8447_low_3
Description: NF8447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8447_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 191 - 366
Target Start/End: Original strand, 43842748 - 43842923
Alignment:
| Q |
191 |
cttcataccataatggagaatattgggatgacaagtcaagaaatgtatatggccacctaattttccagaacaagaaacttatgttagacaatgttgcata |
290 |
Q |
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| T |
43842748 |
cttcataccataatggagaatattgggatgacaagtcaagaaatgtatatggccacctaattttccagaacaagaaacttatgttagacaatgttgcata |
43842847 |
T |
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| Q |
291 |
tgtagtagttgagttagaagaagnnnnnnngagttattaatatcattaccagattttaaccatagcatgaacaatc |
366 |
Q |
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| T |
43842848 |
tgtagtagttgagttagaagaagaaaaaaagagttattaatatcattaccagattttaaccatagcatgaacaatc |
43842923 |
T |
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Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 66 - 127
Target Start/End: Original strand, 43842623 - 43842684
Alignment:
| Q |
66 |
tatcatatcatttgtttatcagaatcaataacatatcttataagcactacaaatatgtaatc |
127 |
Q |
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| T |
43842623 |
tatcatgtcatttgtttatcagaatcaataaaatatcttataagcactacaaatatgtaatc |
43842684 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 192 - 280
Target Start/End: Original strand, 34892741 - 34892829
Alignment:
| Q |
192 |
ttcataccataatggagaatattgggatgacaagtcaagaaatgtatatggccacctaattttccagaacaag-aaacttatgttagaca |
280 |
Q |
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| T |
34892741 |
ttcataccatagtggagcatatgaggatgataagtcaagaaatggataaggccacct-gtttttcaaaacaagaaaacttatgttagaca |
34892829 |
T |
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