View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8447_low_4 (Length: 317)
Name: NF8447_low_4
Description: NF8447
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8447_low_4 |
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| [»] scaffold0281 (4 HSPs) |
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| [»] scaffold0036 (1 HSPs) |
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Alignment Details
Target: scaffold0281 (Bit Score: 90; Significance: 2e-43; HSPs: 4)
Name: scaffold0281
Description:
Target: scaffold0281; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 37 - 142
Target Start/End: Complemental strand, 12002 - 11897
Alignment:
| Q |
37 |
caactatgacattttctatgttccataggaagtacataacccattgttactggtttgaaggaatttaattaacaaataacatgagataagaggtcgtaga |
136 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
12002 |
caacaatgacattttctatgttccataggaagtacagaacccattgttacttgtttgaaggaatttaattaacaaataacatgagataagaggtcataga |
11903 |
T |
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| Q |
137 |
tataaa |
142 |
Q |
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|||||| |
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| T |
11902 |
tataaa |
11897 |
T |
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Target: scaffold0281; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 239 - 302
Target Start/End: Complemental strand, 11800 - 11737
Alignment:
| Q |
239 |
tagagagcgcttcctcccgattggtggtatatggaagccgcactccaacattacatttattcat |
302 |
Q |
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| T |
11800 |
tagagagcgcttcctgccgattggtggtatatggaagccgcactccaacattacatttattcat |
11737 |
T |
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Target: scaffold0281; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 239 - 302
Target Start/End: Complemental strand, 20328 - 20265
Alignment:
| Q |
239 |
tagagagcgcttcctcccgattggtggtatatggaagccgcactccaacattacatttattcat |
302 |
Q |
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| T |
20328 |
tagagagcgcttcctgccgattggtggtatatggaagccgcactccaacattacatttattcat |
20265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0281; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 142
Target Start/End: Complemental strand, 20478 - 20425
Alignment:
| Q |
89 |
gtttgaaggaatttaattaacaaataacatgagataagaggtcgtagatataaa |
142 |
Q |
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| T |
20478 |
gtttgaaggaatttaattaacaaataacatgagataagaggtcatagatataaa |
20425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 37 - 142
Target Start/End: Complemental strand, 31862915 - 31862810
Alignment:
| Q |
37 |
caactatgacattttctatgttccataggaagtacataacccattgttactggtttgaaggaatttaattaacaaataacatgagataagaggtcgtaga |
136 |
Q |
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|||| |||||||||||||||||| |||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||| |||| |
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| T |
31862915 |
caacaatgacattttctatgttctataggaagtacagaacccattgttacttgtttgaatgaatttaattaacaaataacatggaataagaggtcataga |
31862816 |
T |
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| Q |
137 |
tataaa |
142 |
Q |
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|||||| |
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| T |
31862815 |
tataaa |
31862810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 239 - 302
Target Start/End: Complemental strand, 31862713 - 31862650
Alignment:
| Q |
239 |
tagagagcgcttcctcccgattggtggtatatggaagccgcactccaacattacatttattcat |
302 |
Q |
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||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
31862713 |
tagagagcgcttcctgccgattggtggtatatggaagccacactccaacattacatttattcat |
31862650 |
T |
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Target: scaffold0036 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 239 - 302
Target Start/End: Original strand, 47509 - 47572
Alignment:
| Q |
239 |
tagagagcgcttcctcccgattggtggtatatggaagccgcactccaacattacatttattcat |
302 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47509 |
tagagagcgcttcctgccgattggtggtatatggaagccgcactccaacattacatttattcat |
47572 |
T |
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