View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8448_high_24 (Length: 203)
Name: NF8448_high_24
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8448_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 7e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 7e-85
Query Start/End: Original strand, 15 - 185
Target Start/End: Original strand, 18495500 - 18495670
Alignment:
| Q |
15 |
tggtgttaggagagtggagggattatttatcagactatgtactcaaaccatctgaaacaaatggaagcacaaagcacaaattttaagagcataagagaca |
114 |
Q |
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| T |
18495500 |
tggtgttaggagagtggagggattatttatcacactatgtactcaaaccatctgaaacaaatggaagcacaaagcacaaattttaagagcataagagaca |
18495599 |
T |
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| Q |
115 |
agtcaataaatcaagttcaaattgaatggatcctaagaatggagataacaacattcacataatgaggttat |
185 |
Q |
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| T |
18495600 |
agtcaataaatcaagttcaaattgaatggatcctaagaatggagataacaacagtcacataatgagtttat |
18495670 |
T |
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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 40136379 - 40136455
Alignment:
| Q |
89 |
cacaaattttaagagcataagagacaagtcaataaatcaagttcaaattgaatggatcctaagaatggagataacaac |
166 |
Q |
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| T |
40136379 |
cacaaattttaagggcagaaggcacaagccaatatatcaagttcagattgaatggatcc-aagaattgggataacaac |
40136455 |
T |
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