View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8448_high_6 (Length: 405)
Name: NF8448_high_6
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8448_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 15 - 387
Target Start/End: Complemental strand, 46851824 - 46851452
Alignment:
| Q |
15 |
gagaaaaacataggtatcaattcatcacctcaaaaaattgaaacattgtaaacaagttcaacctgaatttctactcaaaatcaacaattaaacataaaaa |
114 |
Q |
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| T |
46851824 |
gagaaaaacataggtatcaattcatcacctcaaaaaattgaaacattgtaaacaagttcaacctgaatttctactcaaaatcaataattaaacataaaaa |
46851725 |
T |
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| Q |
115 |
gcgcaatgaaagacacggaatttgacaagttcttcggaggagaattatcaattttacttaccggttcgagatcctagtaatgagtcgctatcatcgatgt |
214 |
Q |
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| T |
46851724 |
gcgcaatgaaagacacggaatttgacaagttcttcggaggagaattatcaattttacttaccggttcgagatcctagtaatgagtcgctatcatcgatgt |
46851625 |
T |
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| Q |
215 |
tgagtcggaaagcggatgccgacctcggaatgataccggacatttcagtttccggcggattccgatgagttctcccccggcggtattgcggtaaacgagc |
314 |
Q |
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| T |
46851624 |
tgagtcggaaagcggatgccgacctcggaatgataccggacatttcagtttccggcggattccgatgagttcttccccggcggtattgcggtgaacgaac |
46851525 |
T |
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| Q |
315 |
aacgaacggcgaggtgtagaaattgggaaattttgagggcaataacggtattaaagacaaaatatacacacaa |
387 |
Q |
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| T |
46851524 |
aacgaacggcgaggtgtagaaattgggaaattttgagggcaataacggtattaaagacaaaatatacacacaa |
46851452 |
T |
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