View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8448_high_9 (Length: 373)
Name: NF8448_high_9
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8448_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 17 - 365
Target Start/End: Complemental strand, 8793700 - 8793352
Alignment:
| Q |
17 |
cgaatttgtacctgtaatatgcatagagatttaacattataaactgctttgaacggaacatcgaactgaccgattgaagctctaaccaacttggataagt |
116 |
Q |
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| T |
8793700 |
cgaatttgtacctgtaatatgcatagagatttaacattataaactgctttgaacggaacatcgaacgggcagattgaagctctaaccaacttggataagt |
8793601 |
T |
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| Q |
117 |
tgggttcataccctagtttttaccattttccatgaaaatgatatgtgtgcaattccttaagaataggacaaccagaaaaaagctttttgaaatccttgat |
216 |
Q |
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|||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8793600 |
tgggttcataccctagttttaaccattttccataaaaatgatctgtgtgcaattccttaagaataggacaaccagaaaaaagctttttgaaatccttgat |
8793501 |
T |
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| Q |
217 |
ctccaaataaaccgattttaaatgtagggttttgagcgagggaagattaaccgacaaaatcttagtcgacaataacaaattgttcaatttcagaaccaca |
316 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
8793500 |
ctccaaataaaccgattttaaatgtagggctttgagcgagggaagattaaccgacaaaatcttagtcgacaataccaaattgttcaatttcagaaccaca |
8793401 |
T |
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| Q |
317 |
aggttttgagagttgaaaaggacattggacaatctgatcaattcatctc |
365 |
Q |
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| T |
8793400 |
aggttttgagagttgaaaaggacattggacaatctgatcaattcatctc |
8793352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 338
Target Start/End: Complemental strand, 31270657 - 31270555
Alignment:
| Q |
236 |
aaatgtagggttttgagcgagggaagattaaccgacaaaatcttagtcgacaataacaaattgttcaatttcagaaccacaaggttttgagagttgaaaa |
335 |
Q |
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|||||||| |||||||||| |||||||||||| |||||||| |||| || || || | |||| ||||| ||||||||||||| ||||||| |||| |
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| T |
31270657 |
aaatgtagagttttgagcgtgggaagattaacggacaaaattttagccggcatgtgtaactctttcagtttcaaaaccacaaggtttagagagttaaaaa |
31270558 |
T |
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| Q |
336 |
gga |
338 |
Q |
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||| |
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| T |
31270557 |
gga |
31270555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 267
Target Start/End: Original strand, 43685094 - 43685130
Alignment:
| Q |
231 |
attttaaatgtagggttttgagcgagggaagattaac |
267 |
Q |
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|||| |||||||||||||||||||| ||||||||||| |
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| T |
43685094 |
atttgaaatgtagggttttgagcgatggaagattaac |
43685130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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