View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8448_low_11 (Length: 392)
Name: NF8448_low_11
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8448_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 18 - 383
Target Start/End: Original strand, 43664594 - 43664959
Alignment:
| Q |
18 |
actaacatagtgcaacacaattgacagataacaagacgtcgagcatgtgattttgtgcagaatgcaatatatacaacnnnnnnnnnnnnnntataacatt |
117 |
Q |
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| T |
43664594 |
actaacatagtgcaacacaattgacaaataacaagacgtcgagcatgtgattttgtgcagaatgcaatatatacaacaaaaaaataataa-tataacatt |
43664692 |
T |
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| Q |
118 |
caaagttttggtcaaatattgtattgcagagacaaggacagtgtgaggcgcaaagtggtgaacgaccggagaaagacatccaaagaacgatagcggcgag |
217 |
Q |
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| T |
43664693 |
caaagttttggtcaaatattgtattgcagagacaaggacagtgtgaggcgcaaagtggtgaacgaccggagaaagacatcctaagaacgatagcggcgag |
43664792 |
T |
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| Q |
218 |
tgcagggtgcttgagtccagagtaaacaccatagcaacgatcaactatttatgtaacctatatacc-nnnnnnnnnnaaggaaatgtaacctatatacct |
316 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
43664793 |
tgcagggtgcctgagtccagagtaaacaccatagcaacgatcaactatttatgtaacctatataccttttttttttttaggaaatgtaacctatatacct |
43664892 |
T |
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| Q |
317 |
atttgcggaaaatgtgtcccaaaattaattaaacttttcatttccattacaatatgatcaatttcat |
383 |
Q |
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| T |
43664893 |
atttgcggaaaatgtgtcccaaaattaattaaacttttcatttccattacaatatgatcaatttcat |
43664959 |
T |
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