View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8448_low_12 (Length: 388)
Name: NF8448_low_12
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8448_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 14 - 370
Target Start/End: Original strand, 44627708 - 44628064
Alignment:
| Q |
14 |
gagatgaacttggttatcaaagatcttttcaagcttctaaagaaaaacaagaagtccttcaagcaaggagagaaggaacgccagaagagaggatcctctt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| |
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| T |
44627708 |
gagatgaacttggttatcaaagatcttttcaagcttctaaagaaaaacaagaagtccttcaagcaaggagagaaggagcgccggaagagaggatcctctt |
44627807 |
T |
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| Q |
114 |
ctacacgtgcaatgccctgattcaaaaactactctttgtaagtgccttttttaacttgttctacacctgaaacttcacatacatgagtttgaagaggaaa |
213 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44627808 |
ctacacgtgcaacgccctgattcaaaaactactctttgtaagtgccttttttaacttgttctacacctgaaacttcacatacatgagtttgaagaggaaa |
44627907 |
T |
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| Q |
214 |
tgaaaattcatcatgtcattgtatttgttgtttactaagtagctatgttggatttagtttattaatcaaactttaaaatgtaaatgatcgagttactaac |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
44627908 |
tgaaaattcatcatgtcattgtatttgttgtttactaagtagctatgttggattgagtttattaatcaaactttaaaatgtaaatgattgagttactaac |
44628007 |
T |
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| Q |
314 |
tattgaatatgtttactttgaagttgtaaaaaattttacattgttctgtttcctatt |
370 |
Q |
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| T |
44628008 |
tattgaatatgtttactttgaagttgtaaaattttgtacattgttctgtttcctatt |
44628064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 26080833 - 26080955
Alignment:
| Q |
18 |
tgaacttggttatcaaagatcttttcaagcttctaaagaaaaacaagaagtccttcaagcaaggagagaaggaacgccagaagagaggatcctcttctac |
117 |
Q |
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||||||||||| | ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |||| | | ||| ||||||||||||||| |
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| T |
26080833 |
tgaacttggttttgaaagacctttccaagcttctaaagaaaaacaagaagtccttcaagcaaggagagaaagaacacagggagaaaggatcctcttctac |
26080932 |
T |
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| Q |
118 |
acgtgcaatgccctgattcaaaa |
140 |
Q |
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||| ||||| ||||||||||| |
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| T |
26080933 |
gcgtacaatgttctgattcaaaa |
26080955 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 2850876 - 2850786
Alignment:
| Q |
131 |
tgattcaaaaactactctttgtaagtgccttttttaacttgttctacacctgaaacttcacatacatgagtttgaagaggaaatgaaaatt |
221 |
Q |
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||||||||||| ||||| ||||||||| |||| |||||||||||||| ||||||||||||| ||| | |||||||| ||||||||||| |
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| T |
2850876 |
tgattcaaaaagtactccttgtaagtgttttttctaacttgttctacagctgaaacttcacacacaggcacttgaagagaaaatgaaaatt |
2850786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 221
Target Start/End: Complemental strand, 2902908 - 2902818
Alignment:
| Q |
131 |
tgattcaaaaactactctttgtaagtgccttttttaacttgttctacacctgaaacttcacatacatgagtttgaagaggaaatgaaaatt |
221 |
Q |
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||||||||||| ||||| ||||||||| |||| |||||||||||||| ||||||||||||| ||| | |||||||| ||||||||||| |
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| T |
2902908 |
tgattcaaaaagtactccttgtaagtgttttttctaacttgttctacagctgaaacttcacacacaggcacttgaagagaaaatgaaaatt |
2902818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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