View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8448_low_14 (Length: 376)
Name: NF8448_low_14
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8448_low_14 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 5e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 17 - 184
Target Start/End: Complemental strand, 1167084 - 1166917
Alignment:
| Q |
17 |
agagtatcagaggtttgccaatcattcatatcacatagtgattacatggaccttcaaaacttgggggagtgatatccttggaccaattcctccaagacca |
116 |
Q |
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| T |
1167084 |
agagtatcagaggtttaccaatcattcatatcacatagtgattacatggaccttcaaaacttgggggagtgatatcgttggaccaattcctccaagacca |
1166985 |
T |
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| Q |
117 |
agtcaaattaaatttattgatgttgttatagactatttttcttaatggatataagttgaggctttatc |
184 |
Q |
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| T |
1166984 |
agtcaaattaaatttattgtagttgttatagactatttttcttaatagatataagttgaggctttatc |
1166917 |
T |
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