View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8448_low_16 (Length: 364)
Name: NF8448_low_16
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8448_low_16 |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 20 - 343
Target Start/End: Complemental strand, 30348782 - 30348459
Alignment:
| Q |
20 |
atggggagcctgtgtggcccaaggagaagaaaaggcaaaagctgtagaagctgcagtggagtcgcttgcatttcttgagaagcagattcaagggaaaaag |
119 |
Q |
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| T |
30348782 |
atggggagcatgtgtggctcaaggagaagaaaaggcaaaagctgtagatgctgcaatagagtcacttgcatttcttgagaagcagattcaagggaaaaag |
30348683 |
T |
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| Q |
120 |
ttttttggtggagagaagatagggtatcttgatattgtagctggttggatatcatattggcttaatgttcttgaagaacttggagaaatggaactaatta |
219 |
Q |
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| T |
30348682 |
ttttttggtggagagaagatagggtatcttgatattgtagctggttggatatcatattggcttaatgttcttgaagaacttggagaaatggaactaatta |
30348583 |
T |
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| Q |
220 |
atgctgaaaagttcccttctcttcatgaatggggtcataacttcatccagacttcacctatcaaagattgcattccaccaaaggaaatggtggttgaata |
319 |
Q |
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| T |
30348582 |
atgctgaaaagttcccttctcttcatgaatggggtcataacttcatccagacttcacctatcaaagattgcattccaccaaaggaaatggtggttgaata |
30348483 |
T |
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| Q |
320 |
ttttagctttggcatcaattatgt |
343 |
Q |
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|||||||||||||||||| ||||| |
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| T |
30348482 |
ttttagctttggcatcaactatgt |
30348459 |
T |
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