View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8448_low_17 (Length: 363)
Name: NF8448_low_17
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8448_low_17 |
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| [»] scaffold0248 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 5 - 346
Target Start/End: Original strand, 15593742 - 15594081
Alignment:
| Q |
5 |
tttgggagacaaggtgcaaagaaagctcaaataaaccnnnnnnngattattaactaaagcacaagagcctgatagggatcttaatttggaagcagtgttt |
104 |
Q |
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| T |
15593742 |
tttggaagacaaggtccatagaaagctcaaataaaccaaaaac-gattattaactaaagcacaagtgcctgatagggatcttgatttggaagcaaggttt |
15593840 |
T |
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| Q |
105 |
-caaatatgctctactaaaactagaaaacaagacaaaacacacaaacaatttaagtaacatgttccatgcagatttcatcataaacatcaatacttttag |
203 |
Q |
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| T |
15593841 |
tcaaatatgct--actaaaactagaaaacaagacagaaaacacaaacaatttaagcaacatgtttcgtgcaaatttcatcataaacatcaatactttttg |
15593938 |
T |
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| Q |
204 |
ataatgataatcaacctaaatgtttgttatgctaaacaaagaagaatataactagtcagtcttgactacaaggttttcgaacatgctctcgagctccttc |
303 |
Q |
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| T |
15593939 |
ataatgataatcaacctaaatgtttgttgtgctgaacaaagaagagtaaaactagccagtcttgactacaaggttttcgaacatgctctcgagctccttc |
15594038 |
T |
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| Q |
304 |
agattaccctcaagaacatctacttcattatgctggtgattct |
346 |
Q |
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| T |
15594039 |
aaattaccctcaagaacatctacttcattatgctggttattct |
15594081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 261 - 325
Target Start/End: Complemental strand, 4679758 - 4679694
Alignment:
| Q |
261 |
agtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatcta |
325 |
Q |
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| T |
4679758 |
agtcttgacttcaagcttttccaacatgctctccaactccttcagatgatcctcaagaacatcta |
4679694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 284 - 324
Target Start/End: Original strand, 29464835 - 29464875
Alignment:
| Q |
284 |
acatgctctcgagctccttcagattaccctcaagaacatct |
324 |
Q |
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| T |
29464835 |
acatgctctccagctcctccagatgaccctcaagaacatct |
29464875 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 253 - 332
Target Start/End: Complemental strand, 16663210 - 16663131
Alignment:
| Q |
253 |
aactagtcagtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcatt |
332 |
Q |
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| T |
16663210 |
aactagacagtcttgattacaaggtgatccaacatactctcaagctccttcagatgatcctcaagaacatctacttcatt |
16663131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0248 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0248
Description:
Target: scaffold0248; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 151 - 223
Target Start/End: Complemental strand, 17829 - 17757
Alignment:
| Q |
151 |
aatttaagtaacatgttccatgcagatttcatcataaacatcaatacttttagataatgataatcaacctaaa |
223 |
Q |
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| T |
17829 |
aatttaagtaacatgttcaatgcaaattttacaataaacttcaataatgttagataatgataattaacctaaa |
17757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 189
Target Start/End: Original strand, 1767117 - 1767256
Alignment:
| Q |
49 |
gattattaactaaagcacaagagcctgatagggatcttaatttggaagcagtgttt-caaatatgctctactaaaactagaaaacaagacaaaacacaca |
147 |
Q |
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| T |
1767117 |
gattattaacttgagcacaagaaccataaagggatcttgatcttgaagcaaggttttcaaatatgtt--actaaaactaaaaaacaagaaagaaaacaga |
1767214 |
T |
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| Q |
148 |
aacaatttaagtaacatgttccatgcagatttcatcataaac |
189 |
Q |
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| T |
1767215 |
aacaatttaagtagcatgttcaatgcaaacttgatcataaac |
1767256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 346
Target Start/End: Complemental strand, 8586921 - 8586828
Alignment:
| Q |
253 |
aactagtcagtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatctacttcattatgctggtgattct |
346 |
Q |
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| T |
8586921 |
aactagccactcttgaccaaaaggtcttccaacatgctctcaagctccttcagatgatccacaagaacatctatgtcattctcctggttattct |
8586828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 325
Target Start/End: Original strand, 8658323 - 8658388
Alignment:
| Q |
260 |
cagtcttgactacaaggttttcgaacatgctctcgagctccttcagattaccctcaagaacatcta |
325 |
Q |
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| T |
8658323 |
cagtattgactacaagcttttccaacatgatttccagctccttcagatgatcctcaacaacatcta |
8658388 |
T |
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