View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8448_low_18 (Length: 341)
Name: NF8448_low_18
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8448_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 45761030 - 45760713
Alignment:
| Q |
1 |
aataaaacattactcttgtaaatggtggttttgtttgtgaatttggcataaataatatcagcgtttctcttcttagataccatcataccaagtagtactt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45761030 |
aataaaacattactcttgtaaatggtggttttgtttgtgaatttggcatatataatatcagcgtttctcttcttagataccatcataccaagtagtactt |
45760931 |
T |
|
| Q |
101 |
tcaatggttgaagataaaaggttagtacnnnnnnncagaataaactttgtattaaaaaatttcagaaacacataaaccttacactcctatatgttgagca |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45760930 |
tcaatggttgaagataaaaggttagtacaaaaaa-cagaataaactttgtattaaaaaatttcagaaacacataaaccttacactcctatatgttgagca |
45760832 |
T |
|
| Q |
201 |
tggttgaaccaaaccaataaagctatttttgactacctttttcttcattctttactacataataagcaaatacaattattttgggcactatctagcatat |
300 |
Q |
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|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |
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| T |
45760831 |
tggttgaaccaaatcaataaagctatttttgactacctttttcttcattctttactacataatatgcaattacaattattttgggcactatctagcatat |
45760732 |
T |
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| Q |
301 |
tactaatgtaagtaggtga |
319 |
Q |
| |
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||||||||||||||||||| |
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| T |
45760731 |
tactaatgtaagtaggtga |
45760713 |
T |
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