View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8448_low_19 (Length: 341)

Name: NF8448_low_19
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8448_low_19
NF8448_low_19
[»] chr7 (1 HSPs)
chr7 (32-324)||(25272824-25273116)


Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 32 - 324
Target Start/End: Original strand, 25272824 - 25273116
Alignment:
Q  32 atatttggaattctaaaatatgagaattgcattcatgaaactcattaatttagcccaaatttaattgtccattaccnnnnnnnctaatttaaaaaactat 131  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||       |||||||||||||| ||    
T  25272824 atatttggaattctaaaatatgataattgcattcatgaaactcattaatttaacccaaatttaattgtccattaccaaaaaaactaatttaaaaaacaat 25272923  T
Q  132 cttcaccaaactaacaagcaatcaaaagtttagtcacttccttccctctttaatcaatgttaaccaaaacttttcccaaacacacgtaataaactaaaat 231  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||    
T  25272924 cttcaccaaactaacaagcaatcaaaagcttagtcacttccttccctctttaatcaatgttaaccaaaacttttgccaaacacacgtaataaactagaat 25273023  T
Q  232 gcaattaagccaatggacataagtattgatcaagagggtttttaaattgaagaccatgaggtgaaaaaagggggaaccgattgagagaggaaa 324  Q
    ||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25273024 gcaattaagccaatggacataaggattgatcaagagggtctttaaattgaagaccatgaggtgaaaaaagggggaaccgattgagagaggaaa 25273116  T

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