View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8448_low_2 (Length: 615)

Name: NF8448_low_2
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8448_low_2
NF8448_low_2
[»] chr5 (16 HSPs)
chr5 (8-598)||(1032867-1033458)
chr5 (435-597)||(1043687-1043849)
chr5 (489-593)||(1071086-1071190)
chr5 (498-593)||(1065356-1065451)
chr5 (500-593)||(1052958-1053051)
chr5 (500-593)||(1046298-1046391)
chr5 (500-593)||(1058294-1058387)
chr5 (425-492)||(1049941-1050008)
chr5 (8-67)||(1052190-1052249)
chr5 (412-479)||(1070991-1071058)
chr5 (10-60)||(1043277-1043327)
chr5 (10-78)||(1049371-1049439)
chr5 (10-70)||(1049581-1049641)
chr5 (20-62)||(1065046-1065088)
chr5 (10-67)||(1641724-1641781)
chr5 (427-479)||(1065267-1065319)


Alignment Details
Target: chr5 (Bit Score: 524; Significance: 0; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 8 - 598
Target Start/End: Original strand, 1032867 - 1033458
Alignment:
Q  8 gctatattattctgtcagatttggcatgtcggaagagtttctaattcaggtatgtatttatttcctcatataa-tttgaagattattttagttcgatgtt 106  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1032867 gctacattcttctgtcagatttggcatgttggaagagtttctaattctagtatgtatttatttcctcatataaatttgaagattattttagttcgatgtt 1032966  T
Q  107 gtttgttattgttggatttagattgtgtgtcagcgtgcatgcagtcaaccacatcaagatcggctgtctagatttcaatgaaaattttgacttttttaaa 206  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1032967 gtttgttattgttggatttagattgtgtgtcagcgtgcatgcagtcaaccacatcaagatcggctgtctagatttcaatgaaaattttgacttttttaaa 1033066  T
Q  207 tctaaattagtgagcttgaaatccagactgtccaatattgatcggacgtgtctgaataaatgcagtcacaactccttgattatacacaacccaaatctgn 306  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1033067 tctaaattagtgagcttgaaatccggactgtccaatattgatcggacgtgtctgaataaatgcagtcacaactccttgattatacacaacccaaatctgt 1033166  T
Q  307 nnnnnnnctcttttagtattactactattaagaggcaactgctttctgattttttaagtaatatatatgcacacatttatacaaataaaatacttactct 406  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1033167 tttttttttcttttagtattactactattaagaggcaactgctttctgattttttaagtaatatatatgcacacatttatacaaataaaatacttactct 1033266  T
Q  407 gtgtgtccatgttattctcaacaggttttcagccgaatggacaagaaccgatatcttctacagacaagtcactgacaagcaatgattttgaaaaattctc 506  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1033267 gtgtgtccatgttattctcaacaggttttcaaccgaatggacaagaaccgatatcttctacagacaagtcactgacaagcaatgattttgaaaaattctc 1033366  T
Q  507 accaccgagaaggctaaggacagatgaaattcctaatattgtaaatgacttcagactcgccgcaagaaatgctattgaagctggtaagtttg 598  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  1033367 accaccgagaaggctaaggacagatgaaattcctaatattgtaaatgacttcagactcgctgcaagaaatgctattgaagctggtaagtttg 1033458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 435 - 597
Target Start/End: Original strand, 1043687 - 1043849
Alignment:
Q  435 tcagccgaatggacaagaaccgatatcttctacagacaagtcactgacaagcaatgattttgaaaaattctcaccaccgagaaggctaaggacagatgaa 534  Q
    |||||| |||||||||| ||||||||||||||| ||||||||||| |||||||||||| |  || ||||| |   ||||||| ||||||| |||||||||    
T  1043687 tcagccaaatggacaagcaccgatatcttctacggacaagtcactcacaagcaatgatgtacaacaattcacgaaaccgagacggctaagcacagatgaa 1043786  T
Q  535 attcctaatattgtaaatgacttcagactcgccgcaagaaatgctattgaagctggtaagttt 597  Q
    |||||| ||||||| ||||| |||||||| || ||||||||||||||||||||||||||||||    
T  1043787 attcctcatattgtcaatgatttcagacttgctgcaagaaatgctattgaagctggtaagttt 1043849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 489 - 593
Target Start/End: Original strand, 1071086 - 1071190
Alignment:
Q  489 tgattttgaaaaattctcaccaccgagaaggctaaggacagatgaaattcctaatattgtaaatgacttcagactcgccgcaagaaatgctattgaagct 588  Q
    |||| ||| ||||||| ||||||| ||  |||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||||||||||    
T  1071086 tgatgttgcaaaattcacaccaccaaggcggctaaggacagatgaaattccaaacattgtcaatgacttcagactcgctgcaagaaatgctattgaagct 1071185  T
Q  589 ggtaa 593  Q
    |||||    
T  1071186 ggtaa 1071190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 498 - 593
Target Start/End: Original strand, 1065356 - 1065451
Alignment:
Q  498 aaaattctcaccaccgagaaggctaaggacagatgaaattcctaatattgtaaatgacttcagactcgccgcaagaaatgctattgaagctggtaa 593  Q
    ||||||| |||| || ||| ||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||||||||||||||||||    
T  1065356 aaaattcacaccgcctagacggctaaggacagatgaaattcctaacattgtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaa 1065451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 500 - 593
Target Start/End: Original strand, 1052958 - 1053051
Alignment:
Q  500 aattctcaccaccgagaaggctaaggacagatgaaattcctaatattgtaaatgacttcagactcgccgcaagaaatgctattgaagctggtaa 593  Q
    ||||| ||| |||||| |||||||| ||||| ||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||    
T  1052958 aattcacacaaccgaggaggctaagaacagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaa 1053051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 500 - 593
Target Start/End: Original strand, 1046298 - 1046391
Alignment:
Q  500 aattctcaccaccgagaaggctaaggacagatgaaattcctaatattgtaaatgacttcagactcgccgcaagaaatgctattgaagctggtaa 593  Q
    ||||| ||||||| || ||||||||  |||| ||||||||||||||||| |||||||| ||||| || ||||||||||||||||||||||||||    
T  1046298 aattcacaccaccaaggaggctaagatcagaagaaattcctaatattgtcaatgactttagacttgctgcaagaaatgctattgaagctggtaa 1046391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 500 - 593
Target Start/End: Original strand, 1058294 - 1058387
Alignment:
Q  500 aattctcaccaccgagaaggctaaggacagatgaaattcctaatattgtaaatgacttcagactcgccgcaagaaatgctattgaagctggtaa 593  Q
    ||||| |||| || ||| ||||||||| |||||||||||| ||  |||| |||||||||||||| || ||||||||||||||||||||||||||    
T  1058294 aattcacaccgcccagacggctaaggatagatgaaattccaaaccttgtcaatgacttcagacttgctgcaagaaatgctattgaagctggtaa 1058387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 425 - 492
Target Start/End: Original strand, 1049941 - 1050008
Alignment:
Q  425 caacaggttttcagccgaatggacaagaaccgatatcttctacagacaagtcactgacaagcaatgat 492  Q
    |||||| || ||||||||||||||||| |||||||||||||||| |||||||||| |||||| |||||    
T  1049941 caacagtttatcagccgaatggacaagcaccgatatcttctacaaacaagtcactcacaagcgatgat 1050008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 67
Target Start/End: Original strand, 1052190 - 1052249
Alignment:
Q  8 gctatattattctgtcagatttggcatgtcggaagagtttctaattcaggtatgtattta 67  Q
    |||| ||| |||||||||||||||||||| |||||||||||||||||  |||||||||||    
T  1052190 gctacattcttctgtcagatttggcatgttggaagagtttctaattctagtatgtattta 1052249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 479
Target Start/End: Original strand, 1070991 - 1071058
Alignment:
Q  412 tccatgttattctcaacaggttttcagccgaatggacaagaaccgatatcttctacagacaagtcact 479  Q
    ||||||||||||||||||| || |||||| ||||| |||| ||| |||||||||||||||||| ||||    
T  1070991 tccatgttattctcaacagtttatcagccaaatgggcaagcaccaatatcttctacagacaagccact 1071058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 1043277 - 1043327
Alignment:
Q  10 tatattattctgtcagatttggcatgtcggaagagtttctaattcaggtat 60  Q
    |||||| |||||||||||||||||||| ||||||||||| |||||||||||    
T  1043277 tatatttttctgtcagatttggcatgttggaagagtttcaaattcaggtat 1043327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 78
Target Start/End: Original strand, 1049371 - 1049439
Alignment:
Q  10 tatattattctgtcagatttggcatgtcggaagagtttctaattcaggtatgtatttatttcctcatat 78  Q
    |||||| |||||||| ||||||||||  ||||| ||||| ||||||||||||||| |||||| ||||||    
T  1049371 tatatttttctgtcaaatttggcatgctggaagggtttcaaattcaggtatgtatctatttcgtcatat 1049439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 1049581 - 1049641
Alignment:
Q  10 tatattattctgtcagatttggcatgtcggaagagtttctaattcaggtatgtatttattt 70  Q
    |||||| |||||||| ||||||||||| ||||||||||| ||||||| ||| |||||||||    
T  1049581 tatatttttctgtcaaatttggcatgttggaagagtttcaaattcagctatttatttattt 1049641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Original strand, 1065046 - 1065088
Alignment:
Q  20 tgtcagatttggcatgtcggaagagtttctaattcaggtatgt 62  Q
    ||||||||||||||||| |||||||||||| ||||||||||||    
T  1065046 tgtcagatttggcatgttggaagagtttctgattcaggtatgt 1065088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 10 - 67
Target Start/End: Complemental strand, 1641781 - 1641724
Alignment:
Q  10 tatattattctgtcagatttggcatgtcggaagagtttctaattcaggtatgtattta 67  Q
    |||||| || ||||||||||||||||  ||||| | ||||||||||||||| ||||||    
T  1641781 tatattcttttgtcagatttggcatggtggaagggcttctaattcaggtatttattta 1641724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 479
Target Start/End: Original strand, 1065267 - 1065319
Alignment:
Q  427 acaggttttcagccgaatggacaagaaccgatatcttctacagacaagtcact 479  Q
    |||| ||||||||| |||||||| | ||| ||||| |||||||||||||||||    
T  1065267 acagtttttcagccaaatggacaggcaccaatatcatctacagacaagtcact 1065319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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