View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8448_low_21 (Length: 303)
Name: NF8448_low_21
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8448_low_21 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 20 - 285
Target Start/End: Complemental strand, 17806872 - 17806606
Alignment:
| Q |
20 |
gttgagccttgaactacctcagctacatgagttaagcatgagtttgtatcaactgcatgttcacacacattgggagctgaggagaagtggaaaatggaga |
119 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17806872 |
gttgaaccttgaactacctcagctacatgagttaagcatgagtttgtatcaactgcatgttcacacacattaggagctgaggagaagtggaaaatggaga |
17806773 |
T |
|
| Q |
120 |
tgggtttgttgagatgagaaataacaagggctgatgaacttatgatagcagctaaagagagaactaaccaaaatgttttgggaatggattttctaggctt |
219 |
Q |
| |
|
|||||||||| ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17806772 |
tgggtttgttcagatgagaaataataagggctgatgagcttatgatagcagctaaagagagaactaaccaaaatgttttgggaatggattttctaggctt |
17806673 |
T |
|
| Q |
220 |
gtgtagcaaagtttcttgggtagccattctgataatgtagctagtgttggttt-cttagtatgatct |
285 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
17806672 |
gtgtagcaaagtttcttgggtagccattctgataatgtagctagtgttggtttgcttagtatgatct |
17806606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 26 - 253
Target Start/End: Complemental strand, 17776174 - 17775947
Alignment:
| Q |
26 |
ccttgaactacctcagctacatgagttaagcatgagtttgtatcaactgcatgttcacacacattgggagctgaggagaagtggaaaatggagatgggtt |
125 |
Q |
| |
|
|||||||| || || | |||||||||||||||||| |||||||||| ||||| ||||| | ||| ||||||||||||| | ||| | |||||| |||| |
|
|
| T |
17776174 |
ccttgaacaacttctgatacatgagttaagcatgattttgtatcaagagcatgctcacatagattaggagctgaggagagattgaagaaggagataggtt |
17776075 |
T |
|
| Q |
126 |
tgttgagatgagaaataacaagggctgatgaacttatgatagcagctaaagagagaactaaccaaaatgttttgggaatggattttctaggcttgtgtag |
225 |
Q |
| |
|
| || ||||||||||||| ||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||||||||||||| ||||||| ||| |
|
|
| T |
17776074 |
tatttagatgagaaataataagggctgatgaacttatgatagcaactaaagagaggactaaccaaaatgtttttggaatggattttcttggcttgtctag |
17775975 |
T |
|
| Q |
226 |
caaagtttcttgggtagccattctgata |
253 |
Q |
| |
|
||||| || |||| ||||||| |||||| |
|
|
| T |
17775974 |
caaagattgttggatagccatactgata |
17775947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 43 - 230
Target Start/End: Complemental strand, 17820624 - 17820434
Alignment:
| Q |
43 |
tacatgagttaagcatgagtttgtatcaactgcatgttcacac---acattgggagctgaggagaagtggaaaatggagatgggtttgttgagatgagaa |
139 |
Q |
| |
|
|||||||| |||||| || ||||||||||| ||||||||||| ||||| || ||| || || ||| |||| ||||| ||||| |||||||||| | |
|
|
| T |
17820624 |
tacatgagctaagcaagattttgtatcaacagcatgttcacagtaaacattctgaactgtggtgaggtgaaaaaatgagattggtttcttgagatgagta |
17820525 |
T |
|
| Q |
140 |
ataacaagggctgatgaacttatgatagcagctaaagagagaactaaccaaaatgttttgggaatggattttctaggcttgtgtagcaaag |
230 |
Q |
| |
|
|| ||||||||||| ||||||||||| |||||||||| | ||||||||||||||| |||| ||||||||||||||||| |||||||| |
|
|
| T |
17820524 |
gaaattagggctgatgagattatgatagcaactaaagagaggattaaccaaaatgtttttggaagggattttctaggcttgtctagcaaag |
17820434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University