View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8448_low_23 (Length: 286)

Name: NF8448_low_23
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8448_low_23
NF8448_low_23
[»] chr2 (1 HSPs)
chr2 (13-270)||(33637441-33637698)
[»] scaffold0267 (2 HSPs)
scaffold0267 (13-65)||(13413-13465)
scaffold0267 (224-269)||(13615-13660)
[»] chr7 (1 HSPs)
chr7 (13-61)||(20475969-20476017)
[»] chr3 (2 HSPs)
chr3 (13-61)||(3837932-3837980)
chr3 (224-269)||(3838134-3838179)
[»] chr8 (2 HSPs)
chr8 (174-269)||(29125102-29125197)
chr8 (13-58)||(29124928-29124973)
[»] scaffold0128 (1 HSPs)
scaffold0128 (13-62)||(34021-34070)
[»] chr4 (2 HSPs)
chr4 (13-62)||(13784358-13784407)
chr4 (173-269)||(13784151-13784247)


Alignment Details
Target: chr2 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 13 - 270
Target Start/End: Complemental strand, 33637698 - 33637441
Alignment:
Q  13 gagtttggagttcaagagtcttggactcgattggtgaatgttagctatgttcaattgggtatttctatgaatctcaatttagttgattggttgtttccgg 112  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||    
T  33637698 gagtttggagttcaagagtcttggactcgattggtgaatgttagctatgttcaattgggtatttgtgtgaatctcaatttagttgattggttgtttccgg 33637599  T
Q  113 tttgtctctctgaaaatggaaatgtcatgttgatggctagcaaaggagcttttgatgatattattatgtataataggagagatgataaagctgaacatat 212  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  33637598 tttgtctctctgaaaatggaaatgtcatgttgctggctagcaaaggagcttttgatgatattagtatgtataataggagagatgatagagctgaacatat 33637499  T
Q  213 tgaacttcttgacaaccaaatttggtatgctgatgaacatatgaagagcttggttttt 270  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33637498 tgaacttcttgacaaccaaatttggtatgctgatgaacatatgaagagcttggttttt 33637441  T

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Target: scaffold0267 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 65
Target Start/End: Original strand, 13413 - 13465
Alignment:
Q  13 gagtttggagttcaagagtcttggactcgattggtgaatgttagctatgttca 65  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  13413 gagtttggagttcaagagtcttggactcagttggtgaatgttagctatgttca 13465  T

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Target: scaffold0267; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 13615 - 13660
Alignment:
Q  224 acaaccaaatttggtatgctgatgaacatatgaagagcttggtttt 269  Q
    ||||||||||| | |||||||||||||||||| |||||||||||||    
T  13615 acaaccaaattcgttatgctgatgaacatatgcagagcttggtttt 13660  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 20476017 - 20475969
Alignment:
Q  13 gagtttggagttcaagagtcttggactcgattggtgaatgttagctatg 61  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||    
T  20476017 gagtttggggttcaagagtcttggactcggttggtgaatgttagctatg 20475969  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 3837932 - 3837980
Alignment:
Q  13 gagtttggagttcaagagtcttggactcgattggtgaatgttagctatg 61  Q
    ||||||||||||||||||||||||||||  |||||||||||||||||||    
T  3837932 gagtttggagttcaagagtcttggactcagttggtgaatgttagctatg 3837980  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 269
Target Start/End: Original strand, 3838134 - 3838179
Alignment:
Q  224 acaaccaaatttggtatgctgatgaacatatgaagagcttggtttt 269  Q
    ||||||||||| | |||||||| ||||||||| |||||||||||||    
T  3838134 acaaccaaattcgttatgctgaggaacatatgcagagcttggtttt 3838179  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 174 - 269
Target Start/End: Original strand, 29125102 - 29125197
Alignment:
Q  174 tattatgtataataggagagatgataaagctgaacatattgaacttcttgacaaccaaatttggtatgctgatgaacatatgaagagcttggtttt 269  Q
    ||||||||||| |||||||||||||| || |   ||||||  ||||||  || ||||||||  ||||||| ||||||||||| |||| ||||||||    
T  29125102 tattatgtatagtaggagagatgatagagttagtcatattagacttctcaaccaccaaattatgtatgctcatgaacatatgtagagtttggtttt 29125197  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 29124928 - 29124973
Alignment:
Q  13 gagtttggagttcaagagtcttggactcgattggtgaatgttagct 58  Q
    |||||||||||||||||||||||||| |  ||||||||| ||||||    
T  29124928 gagtttggagttcaagagtcttggacccacttggtgaatattagct 29124973  T

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Target: scaffold0128 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 34070 - 34021
Alignment:
Q  13 gagtttggagttcaagagtcttggactcgattggtgaatgttagctatgt 62  Q
    |||| |||||||||||| ||||||||||| ||||||||||| || |||||    
T  34070 gagtatggagttcaagaatcttggactcggttggtgaatgtcagttatgt 34021  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 13 - 62
Target Start/End: Complemental strand, 13784407 - 13784358
Alignment:
Q  13 gagtttggagttcaagagtcttggactcgattggtgaatgttagctatgt 62  Q
    |||| |||||||||||| ||||||||||| ||||||||||| || |||||    
T  13784407 gagtatggagttcaagaatcttggactcggttggtgaatgtcagttatgt 13784358  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 173 - 269
Target Start/End: Complemental strand, 13784247 - 13784151
Alignment:
Q  173 ttattatgtataataggagagatgataaagctgaacatattgaacttcttgacaaccaaatttggtatgctgatgaacatatgaagagcttggtttt 269  Q
    |||||||||||||| |||||||||||| || ||||  | || || ||| | ||||| ||||||||   || |||||||||||| | |||||||||||    
T  13784247 ttattatgtataatcggagagatgatatagttgaatttcttcaatttcctaacaacaaaatttgggcggccgatgaacatatgcatagcttggtttt 13784151  T

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