View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8448_low_25 (Length: 266)
Name: NF8448_low_25
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8448_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 201; Significance: 1e-110; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 50 - 254
Target Start/End: Complemental strand, 474147 - 473943
Alignment:
| Q |
50 |
atatatacgtacccagagaaataagcaatgggagcaagaaaaatggttgcaaaagcactacggtatactacaaatacgttgggactcataccctccaaaa |
149 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
474147 |
atatatacgtacccagagaaataagcaatgggagcaagaaaaatggttgcaaaagcactacggtatactacaaatacgttgggactcataccctccaaaa |
474048 |
T |
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| Q |
150 |
gggtgactcttatgccaagattcatacctgcatatataaactgtatcaataccataaccattattggcatataatactccatgtctaaacatcccatctc |
249 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
474047 |
gggtgactcttatgccaagattcatacctgcatatataaactgtatcaataccataaccattattggcatataatactccatgtctaaacatcccatctt |
473948 |
T |
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| Q |
250 |
tgctt |
254 |
Q |
| |
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||||| |
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| T |
473947 |
tgctt |
473943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 59 - 233
Target Start/End: Complemental strand, 466672 - 466498
Alignment:
| Q |
59 |
tacccagagaaataagcaatgggagcaagaaaaatggttgcaaaagcactacggtatactacaaatacgttgggactcataccctccaaaagggtgactc |
158 |
Q |
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||||| || |||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| | | || |
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| T |
466672 |
taccctgataaataagcgaggggagcaagaacaatggttgcaaaagcactacggtatactacaaatatccttggactcataccctccaaaagtgccattc |
466573 |
T |
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| Q |
159 |
ttatgccaagattcatacctgcatatataaactgtatcaataccataaccattattggcatataatactccatgt |
233 |
Q |
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|| |||||||| || ||||||| |||| ||||||||||| | |||||| |||||||||| || |||||||||| |
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| T |
466572 |
ttgtgccaagagtctgacctgcaaatattaactgtatcaacaacataactattattggcaggtagtactccatgt |
466498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 58 - 254
Target Start/End: Complemental strand, 479613 - 479417
Alignment:
| Q |
58 |
gtacccagagaaataagcaatgggagcaagaaaaatggttgcaaaagcactacggtatactacaaatacgttgggactcataccctccaaaagggtgact |
157 |
Q |
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|||||| || |||||||||| |||||||||| ||||||||||| |||| |||||| |||||||||| | || |||| ||||| ||||| | | |
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| T |
479613 |
gtacccggaaaaataagcaacaggagcaagaagaatggttgcaatagcatgacggtacactacaaatatcctagggctcaaaccctgcaaaaatacaatt |
479514 |
T |
|
| Q |
158 |
cttatgccaagattcatacctgcatatataaactgtatcaataccataaccattattggcatataatactccatgtctaaacatcccatctctgctt |
254 |
Q |
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||| |||||| | || ||||||||||||||||| |||||| |||||| |||||||||| | || ||||||||||||||||||||||||| ||||| |
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| T |
479513 |
cttgtgccaatacccaaacctgcatatataaactctatcaacaccatagccattattggaaggtagtactccatgtctaaacatcccatctttgctt |
479417 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 150
Target Start/End: Complemental strand, 445863 - 445781
Alignment:
| Q |
68 |
aaataagcaatgggagcaagaaaaatggttgcaaaagcactacggtatactacaaatacgttgggactcataccctccaaaag |
150 |
Q |
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||||||||||| ||||||||||||||||||||||||||| ||||||| | ||||||||| || ||||||||||||||||| |
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| T |
445863 |
aaataagcaattggagcaagaaaaatggttgcaaaagcattacggtacattacaaataccgccgggctcataccctccaaaag |
445781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 59 - 126
Target Start/End: Complemental strand, 454956 - 454889
Alignment:
| Q |
59 |
tacccagagaaataagcaatgggagcaagaaaaatggttgcaaaagcactacggtatactacaaatac |
126 |
Q |
| |
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|||||||| |||||||||||||||||||||| |||||||||||||||| |||||| |||| |||||| |
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| T |
454956 |
tacccagataaataagcaatgggagcaagaagaatggttgcaaaagcatgacggtaaactataaatac |
454889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 58 - 233
Target Start/End: Original strand, 27493756 - 27493931
Alignment:
| Q |
58 |
gtacccagagaaataagcaatgggagcaagaaaaatggttgcaaaagcactacggtatactacaaatacgttgggactcataccctccaaaagggtgact |
157 |
Q |
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|||||| || |||||||||| ||||||||||||||||||||||||||| || |||||||||||||| | ||||||| |||||||||||| | | |
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| T |
27493756 |
gtaccctgataaataagcaacaggagcaagaaaaatggttgcaaaagcatagcgatatactacaaataccattggactcaaaccctccaaaagtacaatt |
27493855 |
T |
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| Q |
158 |
cttatgccaagattcatacctgcatatataaactgtatcaataccataaccattattggcatataatactccatgt |
233 |
Q |
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||| | |||||| ||| |||| |||||| ||||||||||||| ||||||||||||||| | || |||||||||| |
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| T |
27493856 |
cttgtaccaagagtcaagcctgaatatattaactgtatcaataacataaccattattggtaagtagtactccatgt |
27493931 |
T |
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