View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8448_low_26 (Length: 256)
Name: NF8448_low_26
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8448_low_26 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 9e-85; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 49637704 - 49637479
Alignment:
| Q |
19 |
accctaaacccccaattttcacaaaccctaaaatctccaattctccatagatcctcttctttcccatcgaattttccaatattttcaacaccgttgacca |
118 |
Q |
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| T |
49637704 |
accctaaacccccaattttcacaaaccctaaaatctccaattctccatagatcctcttctttcccatcgaattttccaatattttcaacaccgttgacca |
49637605 |
T |
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| Q |
119 |
cactcgaggtttatccaaatacccatttcataaagttccgnnnnnnnnncttcatctgggtcg-nnnnnnnnattcacgcaccctaggaatgttgggtac |
217 |
Q |
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| T |
49637604 |
cactcgaggtttatccaaatacccatttcataaagttccgttttttttttttcatctgggtcgtttttttttattcacgcaccctaggaatgttgggtac |
49637505 |
T |
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| Q |
218 |
tgctatgaacttttcgcgcgggcgtg |
243 |
Q |
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| T |
49637504 |
tgctatgaacttttcgcgcggtcgtg |
49637479 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 67 - 157
Target Start/End: Complemental strand, 53435098 - 53435008
Alignment:
| Q |
67 |
agatcctcttctttcccatcgaattttccaatattttcaacaccgttgaccacactcgaggtttatccaaatacccatttcataaagttcc |
157 |
Q |
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| T |
53435098 |
agatcctcttctttcttatcgaattttctattaatctcaacatcgttgaccacactcgaggtttatccaaatacccatttcataaagttcc |
53435008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 53434979 - 53434940
Alignment:
| Q |
190 |
attcacgcaccctaggaatgttgggtactgctatgaacttt |
230 |
Q |
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| T |
53434979 |
attcacgcaccctagga-tgttgggtactgctatgaacttt |
53434940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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