View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8448_low_3 (Length: 540)
Name: NF8448_low_3
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8448_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 125; Significance: 4e-64; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 303 - 527
Target Start/End: Original strand, 31131038 - 31131275
Alignment:
| Q |
303 |
gagtggaaaataaatagactttaataattgtcctgaagtatttattgacttttacgagtgaaaaagagatcgtcat-------------tgaagtatctt |
389 |
Q |
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| T |
31131038 |
gagtggaaaatcagtagactttaataattgtcttgaactatttattgacttttacgagtgagaaagagatcgtcatggatgacaccgattgaagtatctt |
31131137 |
T |
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| Q |
390 |
acgtaccaaatggaacccgaaacattggtttctttgttgcttttctctgcaactctcgtttcgttcttattcttagccacnnnnnnncaatgcaaaacac |
489 |
Q |
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| T |
31131138 |
acgtaccaaatggaacccgaaacattggtttctttgttgcttttctctgcaactcttgtttcgttcctattcttaaccataaaaaaacaatgcaaaacac |
31131237 |
T |
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| Q |
490 |
cctccaaaatccccaactcataccctatcattggttct |
527 |
Q |
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| T |
31131238 |
tctccaaaatccccaactcatacactatcatttgttct |
31131275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 98 - 221
Target Start/End: Original strand, 31130576 - 31130695
Alignment:
| Q |
98 |
taatgttgttattatatacatttataaaataataataatagaacatttaatnnnnnnnnngatttgactggatatgcttaaaaacgatcttctacaaaaa |
197 |
Q |
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| T |
31130576 |
taatgttgttattatatacatttataaaataataata---gaacatttaataaaaaaaa-gatttgactggatatgcttaaaaacgatcttctacaaaaa |
31130671 |
T |
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| Q |
198 |
ctcccattctaataatagaacata |
221 |
Q |
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| T |
31130672 |
ctctcattcaaataatagaacata |
31130695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 384 - 468
Target Start/End: Original strand, 31126409 - 31126493
Alignment:
| Q |
384 |
tatcttacgtaccaaatggaacccgaaacattggtttctttgttgcttttctctgcaactctcgtttcgttcttattcttagcca |
468 |
Q |
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| T |
31126409 |
tatcttacgtaccaaatggaactcgaaatattggtttctttcttactttactctgtaactctcgtgtcgttcttattcttagcca |
31126493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 62 - 115
Target Start/End: Original strand, 31130301 - 31130354
Alignment:
| Q |
62 |
ccagatttagaaagaattgctgacaagctaagatgttaatgttgttattatata |
115 |
Q |
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| T |
31130301 |
ccagatttagaaagaattgttgacaagctaagatgttaacgttgttattatata |
31130354 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 31130220 - 31130264
Alignment:
| Q |
19 |
caactagtatagcgacaatcacacagagatgacaacattccttcc |
63 |
Q |
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| T |
31130220 |
caactagtatagcgacaatcacacagagatgacaacattccttcc |
31130264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 395 - 469
Target Start/End: Original strand, 31077102 - 31077176
Alignment:
| Q |
395 |
ccaaatggaacccgaaacattggtttctttgttgcttttctctgcaactctcgtttcgttcttattcttagccac |
469 |
Q |
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| T |
31077102 |
ccaaatggaactcgaaactttgctttctttgttacttttctcagcaccactcgtttggttcttattcttagccac |
31077176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 303 - 355
Target Start/End: Original strand, 31125881 - 31125933
Alignment:
| Q |
303 |
gagtggaaaataaatagactttaataattgtcctgaagtatttattgactttt |
355 |
Q |
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| T |
31125881 |
gagtggaaaataaatagactttaataattgtcttaaacaatttatttactttt |
31125933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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