View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8448_low_30 (Length: 234)
Name: NF8448_low_30
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8448_low_30 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 234
Target Start/End: Original strand, 38412227 - 38412441
Alignment:
| Q |
20 |
cagacctcatcttattcaagtgattgagtgcattatctgtaagcgaaattgcaggtgccacggccccagatgcaggtgcagctaaaatatagaatgaaag |
119 |
Q |
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| T |
38412227 |
cagacctcatcttattcaagtgattgagtgcattatcggtaagcgaaattgcaggtgccacggccccagatgcaggtgcagctaaaatatagtatgaaag |
38412326 |
T |
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| Q |
120 |
aaaatgttgaataaatagacggtggagacagacaggggaaaatatcacaatatatagtgcacactagtaaataacagaaaccgaaatacttcattggact |
219 |
Q |
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|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
38412327 |
caaatgttgaataaatacatggtggagacagacaggggaaaatatcacaatatatagtgcacactagtaaataacagaaaccgaaatacttcgttgcact |
38412426 |
T |
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| Q |
220 |
ccgatttttctctct |
234 |
Q |
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||||||||||||||| |
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| T |
38412427 |
ccgatttttctctct |
38412441 |
T |
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