View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8448_low_34 (Length: 225)
Name: NF8448_low_34
Description: NF8448
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8448_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 3e-84; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 14 - 175
Target Start/End: Original strand, 45107749 - 45107910
Alignment:
| Q |
14 |
cagagataacaaaaactataacaagaattttaaaatatattatatatttgctggaacaagatatttgaattgatatagcttgttgagggaaagttcaaag |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45107749 |
cagagataacaaaaactataacaagaattttaaaatatattatatatttgctggaacaagatatttgaattgatatagcttgttgagggaaagttcaaag |
45107848 |
T |
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| Q |
114 |
aagaatcatggagaaagttttacgacacagtagagaacgagtgaggaaggagaaaggtttag |
175 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45107849 |
aagaatcatggagaaagtattacgacacagtagagaacgagtgaggaaggagaaaggtttag |
45107910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 14 - 175
Target Start/End: Complemental strand, 38487259 - 38487098
Alignment:
| Q |
14 |
cagagataacaaaaactataacaagaattttaaaatatattatatatttgctggaacaagatatttgaattgatatagcttgttgagggaaagttcaaag |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
38487259 |
cagagataacaaaaactataacaagaattttaaaatatattatatatttgctggaacaagatatttgaattgatatagcttgttgtgggaaagttcaaag |
38487160 |
T |
|
| Q |
114 |
aagaatcatggagaaagttttacgacacagtagagaacgagtgaggaaggagaaaggtttag |
175 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38487159 |
aagaatcatggagaaagtattacgacacagtagagaacgagtgaggaaggagaaaggtttag |
38487098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 105; Significance: 1e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 14 - 122
Target Start/End: Complemental strand, 42877960 - 42877852
Alignment:
| Q |
14 |
cagagataacaaaaactataacaagaattttaaaatatattatatatttgctggaacaagatatttgaattgatatagcttgttgagggaaagttcaaag |
113 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
42877960 |
cagagataacaaaaactataacaagaattttaaaatatattatatatttgctggaacaagatatttgaattgatatagcttgttgtgggaaagttcaaag |
42877861 |
T |
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| Q |
114 |
aagaatcat |
122 |
Q |
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||||||||| |
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| T |
42877860 |
aagaatcat |
42877852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 14 - 167
Target Start/End: Original strand, 4930305 - 4930476
Alignment:
| Q |
14 |
cagagataacaaaaactataacaagaattttaaaatatattata--tatttgctggaacaagatatttgaattgatatagcttgttgagggaaagttca- |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4930305 |
cagagataacaaaaactataacaagaattttaaaatatattatatatatttgctggaacaagatatttgaattgatatagcttgttgagggaaagtacag |
4930404 |
T |
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| Q |
111 |
---------------aagaagaatcatggagaaagttttacgacacagtagagaacgagtgaggaaggagaa |
167 |
Q |
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||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |
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| T |
4930405 |
agaagaatcatagagaagaagaatcatggagaaagtattacgacacagcagagaacgagtgaggaaggagaa |
4930476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 25 - 127
Target Start/End: Original strand, 1859553 - 1859655
Alignment:
| Q |
25 |
aaaactataacaagaattttaaaatatattatatatttgctggaacaa-gatatttgaattgatatagcttgttgagggaaagttcaaagaagaatcatg |
123 |
Q |
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||||| ||| ||||||||| |||| ||||||||| ||||||||||||| || ||||| ||||||||| ||||||||| |||||| | | |||||||||| |
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| T |
1859553 |
aaaaccataccaagaattt-aaaagatattatatttttgctggaacaaggagatttggattgatataacttgttgagagaaagtatagaaaagaatcatg |
1859651 |
T |
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| Q |
124 |
gaga |
127 |
Q |
| |
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|||| |
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| T |
1859652 |
gaga |
1859655 |
T |
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